BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09820.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489834 jgi|Araly1|489834|fgenesh2_kg.6__2968__AT4G09820.1 2527 0.0
> Ahg489834 jgi|Araly1|489834|fgenesh2_kg.6__2968__AT4G09820.1
Length=1708
Score = 2527 bits (1368), Expect = 0.0
Identities = 1602/1714 (93%), Gaps = 19/1714 (1%)
Strand=Plus/Plus
Query 25 TTTTCGTATCTCCGGGAACGATGGATGAATCAAGTATTATTCCGGCAGAGAAAGTGGCCG 84
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTTT-GTATCTCCGGGAAAGATGGATGAATCAAGTATTCTTCCGGCAGAGAAAGTGGCCG 59
Query 85 GAGCTGAGAAAAAAGAGCTTCAAGGGCTGCTTAAGACGGCGGTTCAATCTGTGGACTGGA 144
|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 60 GAGCTGAGAAAAGAGAGCTGCAAGGGCTGCTTAAGACCGCGGTTCAATCTGTGGAGTGGA 119
Query 145 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTCTTGGTGTGGGGGAATGGAT 204
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 120 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTATTGGTGTGGGCGAGTGGAT 179
Query 205 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAACCAGCGGAGGTGACGGCAGAAG 264
||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||
Sbjct 180 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAGCCGGCGGAGGTGACCGCGGAAG 239
Query 265 AGGCGGCGTTAGAGAGGAGCCAACAGCTCAGGGAGCTTTATGAGACACTTTTAGCCGGAG 324
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 AAGCTGCGTTAGAGAGGAGCCAACAGCTGAGGGAGCTTTATGAGACACTTTTAGCCGGAG 299
Query 325 AGTCAACGTCAGAAGCAAGAGCATGCACCGCATTGTCACCGGAGGATTTGACGGAGACAG 384
||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||| |
Sbjct 300 AGTCAACGTCAGAAGCAAGGGCATGCACCGCATTATCGCCGGAGGATTTAACGGAGACTG 359
Query 385 AATGGTTTTATCTAATGTGCGTCTCTTTCTCTTTTCCTCCTCCATCTGGGATGCCAGGAA 444
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 360 AATGGTTTTATCTAATGTGTGTCTCTTTCTCTTTCCCTCCTCCTTCTGGGATGCCAGGAA 419
Query 445 AAGCGTATGCAAGGAGGAAGCACGTATGGCTAAGTGGTGCAAATGAAGTTGACAGTAAAA 504
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 AAGCGTATGCGAGGAGGAAGCACGTATGGCTAAGTTGTGCAAATGAAGTTGACAGTAAAA 479
Query 505 CTTTTTCTAGAGCTATTCTCGCTAAGAGTGCTAAAATTCAGACAGTGGTTTGCATTCCAA 564
|||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 480 CTTTTTCTAGGGCTATTCTTGCTAAGAGTGCTAAAATTCAGACTGTGGTTTGCATTCCCA 539
Query 565 TGCTTGATGGTGTTGTGGAACTAGGCACAACGAAAAAGGTAAGAGAAGATGTAGAGTTTG 624
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 540 TGCTTGATGGTGTTGTGGAACTAGGAACAACGAAAAAGGTAAGAGAAGGTGTAGAGTTTG 599
Query 625 TTGAGCTCACAAAGAGTTTCTTCTATGACCACTGCAAGACGAACCCAAAGCCGGCTCTTT 684
||||||||| ||||||||||||| |||||||||||||| |||| ||||||| ||||||||
Sbjct 600 TTGAGCTCATAAAGAGTTTCTTCCATGACCACTGCAAGTCGAATCCAAAGCAGGCTCTTT 659
Query 685 CTGAACACTCCACCTACGAAGTGCATgaagaagccgaagacgaagaagaagtagaagaag 744
||||||||||||||||| |||||||||||||||| | | | |||||||||||||||||||
Sbjct 660 CTGAACACTCCACCTACCAAGTGCATGAAGAAGCTG-A-A-GAAGAAGAAGTAGAAGAAG 716
Query 745 agaTGACAATGTCAGAGGAAATGAGGCTTGGCTCTCCTGATGATGAAGATGTTTCCAATC 804
| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 717 AAATGACAATGTCAGAGGAGATGAGGCTTGGCTCTCCTGATGATGACGATGTCTCCAATC 776
Query 805 AAAATCTACACTCTGATCTTCATATTGAATCAACCCATACGTTAGACACACATATGGACA 864
|||||||||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||
Sbjct 777 AAAATCTACACTCTGATCATCATATAGAATCAAGCCACACGTTAGACACACACATGGACA 836
Query 865 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCT-CATG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 837 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCTTC-TG 895
Query 924 TCACACCCCACAAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCATCG 983
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 896 TCACATCCCACGAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCCTCG 955
Query 984 TTTGCCACGTGGAGGGTTGAGAATGGCAAAGAGCATCAGCAAGT-GA-AAA-CGGCGCCG 1040
||||||||||||||||||||||||| |||||| ||||||| ||| || ||| |||| ||
Sbjct 956 TTTGCCACGTGGAGGGTTGAGAATGTCAAAGACCATCAGCGAGTAGAGAAAGCGGCTTCG 1015
Query 1041 TCGTCACAATGGGTGCTCAAACAAATGATCTTCAGAGTTCCTTTCCTCCATGACAACACT 1100
|| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1016 TCTTCACAATGGATGCTCAAACACATGATCTTGAGAGTTCCTTTCCTCCATGACAACACT 1075
Query 1101 AAAGATAAGAGGCTACCGCGGGAAGATCTGAGCCACGTAGTAGCAGAGCGACGCAGGAGG 1160
||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1076 AAAGAGAAGAGGCTACCGCGGGAAGAGCTGAACCACGTAGTGGCAGAGCGACGCAGGAGA 1135
Query 1161 GAGAAGCTGAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACCAAGATG 1220
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 GAGAAGCTTAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACAAAGATG 1195
Query 1221 GATAAAGTCTCAATCCTTGGAGACACCATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1280
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 GATAAAGTATCAATCCTTGGAGACACTATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1255
Query 1281 CATGAGCTTGAGAATACTCATCATGAGCAACAGCATAAGCGGACGCGTACTTGTAAGAGA 1340
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1256 CATGAGCTTGAGAGTACTCATCATGAGCAACAACATAAGCGGACACGTACTTGTAAGAGA 1315
Query 1341 AAAACATCGGAGGAGGTGGAGGTTTCCATCATAGAGAATGATGTTTTGTTAGAGATGAGA 1400
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1316 AAAACATCGGAAGAGGTGGAGGTTTCCATCATAGAGAGTGATGTTTTGTTAGAGATGAGA 1375
Query 1401 TGTGAGTACCGAGATGGTTTGTTGCTTGACATTCTTCAGGTTCTTCATGAGCTTGGTATA 1460
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1376 TGCGAGTACCGAGATGGTTTGTTGCTTGATATTCTTCAGGTTCTTCATGAGCTTGGTATA 1435
Query 1461 GAGACTACGGCAGTTCATACCTCGGTGAACGACC-ATGATTTCGAGGCGGAGATAAGGGC 1519
|||||||| || ||||||||| |||| ||||||| | ||||| |||||||||||||||||
Sbjct 1436 GAGACTACTGCGGTTCATACCGCGGTAAACGACCTA-GATTTTGAGGCGGAGATAAGGGC 1494
Query 1520 GAAAGTAAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1579
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GAAAGTGAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1554
Query 1580 AATACATGATACTAATCTATAGACCCTAACTTTATTGATGCCAACTCTAGAGAAGGATAA 1639
| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1555 AGTACATGATACTACTCTATAGATCCTAACTTTATTGATGCCAACTCTAGAGAAAGATAA 1614
Query 1640 TTAAGCGTATTTTTGTTTTAGCCTCACATGTATTAAGACATCAGTTACATA---TATA-- 1694
|||| | |||||||||||||||||||| | ||| | ||||||||||||||| ||||
Sbjct 1615 TTAAACATATTTTTGTTTTAGCCTCACGTTTATCACGACATCAGTTACATACAGTATATC 1674
Query 1695 G-CC--GGATGCAACATATAAATGAAAATGTACT 1725
| || |||||||||||||||||| |||||||||
Sbjct 1675 GGCCCCGGATGCAACATATAAATGCAAATGTACT 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5