BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09820.1 Length=1833 Score E Sequences producing significant alignments: (Bits) Value Ahg489834 jgi|Araly1|489834|fgenesh2_kg.6__2968__AT4G09820.1 2527 0.0 > Ahg489834 jgi|Araly1|489834|fgenesh2_kg.6__2968__AT4G09820.1 Length=1708 Score = 2527 bits (1368), Expect = 0.0 Identities = 1602/1714 (93%), Gaps = 19/1714 (1%) Strand=Plus/Plus Query 25 TTTTCGTATCTCCGGGAACGATGGATGAATCAAGTATTATTCCGGCAGAGAAAGTGGCCG 84 |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 TTTT-GTATCTCCGGGAAAGATGGATGAATCAAGTATTCTTCCGGCAGAGAAAGTGGCCG 59 Query 85 GAGCTGAGAAAAAAGAGCTTCAAGGGCTGCTTAAGACGGCGGTTCAATCTGTGGACTGGA 144 |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 60 GAGCTGAGAAAAGAGAGCTGCAAGGGCTGCTTAAGACCGCGGTTCAATCTGTGGAGTGGA 119 Query 145 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTCTTGGTGTGGGGGAATGGAT 204 |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| Sbjct 120 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTATTGGTGTGGGCGAGTGGAT 179 Query 205 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAACCAGCGGAGGTGACGGCAGAAG 264 ||||||||||||||||||||||||||||||||||||| || ||||||||||| || |||| Sbjct 180 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAGCCGGCGGAGGTGACCGCGGAAG 239 Query 265 AGGCGGCGTTAGAGAGGAGCCAACAGCTCAGGGAGCTTTATGAGACACTTTTAGCCGGAG 324 | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 240 AAGCTGCGTTAGAGAGGAGCCAACAGCTGAGGGAGCTTTATGAGACACTTTTAGCCGGAG 299 Query 325 AGTCAACGTCAGAAGCAAGAGCATGCACCGCATTGTCACCGGAGGATTTGACGGAGACAG 384 ||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||| | Sbjct 300 AGTCAACGTCAGAAGCAAGGGCATGCACCGCATTATCGCCGGAGGATTTAACGGAGACTG 359 Query 385 AATGGTTTTATCTAATGTGCGTCTCTTTCTCTTTTCCTCCTCCATCTGGGATGCCAGGAA 444 ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 360 AATGGTTTTATCTAATGTGTGTCTCTTTCTCTTTCCCTCCTCCTTCTGGGATGCCAGGAA 419 Query 445 AAGCGTATGCAAGGAGGAAGCACGTATGGCTAAGTGGTGCAAATGAAGTTGACAGTAAAA 504 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 420 AAGCGTATGCGAGGAGGAAGCACGTATGGCTAAGTTGTGCAAATGAAGTTGACAGTAAAA 479 Query 505 CTTTTTCTAGAGCTATTCTCGCTAAGAGTGCTAAAATTCAGACAGTGGTTTGCATTCCAA 564 |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| | Sbjct 480 CTTTTTCTAGGGCTATTCTTGCTAAGAGTGCTAAAATTCAGACTGTGGTTTGCATTCCCA 539 Query 565 TGCTTGATGGTGTTGTGGAACTAGGCACAACGAAAAAGGTAAGAGAAGATGTAGAGTTTG 624 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 540 TGCTTGATGGTGTTGTGGAACTAGGAACAACGAAAAAGGTAAGAGAAGGTGTAGAGTTTG 599 Query 625 TTGAGCTCACAAAGAGTTTCTTCTATGACCACTGCAAGACGAACCCAAAGCCGGCTCTTT 684 ||||||||| ||||||||||||| |||||||||||||| |||| ||||||| |||||||| Sbjct 600 TTGAGCTCATAAAGAGTTTCTTCCATGACCACTGCAAGTCGAATCCAAAGCAGGCTCTTT 659 Query 685 CTGAACACTCCACCTACGAAGTGCATgaagaagccgaagacgaagaagaagtagaagaag 744 ||||||||||||||||| |||||||||||||||| | | | ||||||||||||||||||| Sbjct 660 CTGAACACTCCACCTACCAAGTGCATGAAGAAGCTG-A-A-GAAGAAGAAGTAGAAGAAG 716 Query 745 agaTGACAATGTCAGAGGAAATGAGGCTTGGCTCTCCTGATGATGAAGATGTTTCCAATC 804 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 717 AAATGACAATGTCAGAGGAGATGAGGCTTGGCTCTCCTGATGATGACGATGTCTCCAATC 776 Query 805 AAAATCTACACTCTGATCTTCATATTGAATCAACCCATACGTTAGACACACATATGGACA 864 |||||||||||||||||| |||||| ||||||| ||| |||||||||||||| ||||||| Sbjct 777 AAAATCTACACTCTGATCATCATATAGAATCAAGCCACACGTTAGACACACACATGGACA 836 Query 865 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCT-CATG 923 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 837 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCTTC-TG 895 Query 924 TCACACCCCACAAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCATCG 983 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 896 TCACATCCCACGAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCCTCG 955 Query 984 TTTGCCACGTGGAGGGTTGAGAATGGCAAAGAGCATCAGCAAGT-GA-AAA-CGGCGCCG 1040 ||||||||||||||||||||||||| |||||| ||||||| ||| || ||| |||| || Sbjct 956 TTTGCCACGTGGAGGGTTGAGAATGTCAAAGACCATCAGCGAGTAGAGAAAGCGGCTTCG 1015 Query 1041 TCGTCACAATGGGTGCTCAAACAAATGATCTTCAGAGTTCCTTTCCTCCATGACAACACT 1100 || ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1016 TCTTCACAATGGATGCTCAAACACATGATCTTGAGAGTTCCTTTCCTCCATGACAACACT 1075 Query 1101 AAAGATAAGAGGCTACCGCGGGAAGATCTGAGCCACGTAGTAGCAGAGCGACGCAGGAGG 1160 ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||| Sbjct 1076 AAAGAGAAGAGGCTACCGCGGGAAGAGCTGAACCACGTAGTGGCAGAGCGACGCAGGAGA 1135 Query 1161 GAGAAGCTGAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACCAAGATG 1220 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1136 GAGAAGCTTAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACAAAGATG 1195 Query 1221 GATAAAGTCTCAATCCTTGGAGACACCATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1280 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1196 GATAAAGTATCAATCCTTGGAGACACTATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1255 Query 1281 CATGAGCTTGAGAATACTCATCATGAGCAACAGCATAAGCGGACGCGTACTTGTAAGAGA 1340 ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1256 CATGAGCTTGAGAGTACTCATCATGAGCAACAACATAAGCGGACACGTACTTGTAAGAGA 1315 Query 1341 AAAACATCGGAGGAGGTGGAGGTTTCCATCATAGAGAATGATGTTTTGTTAGAGATGAGA 1400 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1316 AAAACATCGGAAGAGGTGGAGGTTTCCATCATAGAGAGTGATGTTTTGTTAGAGATGAGA 1375 Query 1401 TGTGAGTACCGAGATGGTTTGTTGCTTGACATTCTTCAGGTTCTTCATGAGCTTGGTATA 1460 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1376 TGCGAGTACCGAGATGGTTTGTTGCTTGATATTCTTCAGGTTCTTCATGAGCTTGGTATA 1435 Query 1461 GAGACTACGGCAGTTCATACCTCGGTGAACGACC-ATGATTTCGAGGCGGAGATAAGGGC 1519 |||||||| || ||||||||| |||| ||||||| | ||||| ||||||||||||||||| Sbjct 1436 GAGACTACTGCGGTTCATACCGCGGTAAACGACCTA-GATTTTGAGGCGGAGATAAGGGC 1494 Query 1520 GAAAGTAAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1579 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 GAAAGTGAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1554 Query 1580 AATACATGATACTAATCTATAGACCCTAACTTTATTGATGCCAACTCTAGAGAAGGATAA 1639 | |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1555 AGTACATGATACTACTCTATAGATCCTAACTTTATTGATGCCAACTCTAGAGAAAGATAA 1614 Query 1640 TTAAGCGTATTTTTGTTTTAGCCTCACATGTATTAAGACATCAGTTACATA---TATA-- 1694 |||| | |||||||||||||||||||| | ||| | ||||||||||||||| |||| Sbjct 1615 TTAAACATATTTTTGTTTTAGCCTCACGTTTATCACGACATCAGTTACATACAGTATATC 1674 Query 1695 G-CC--GGATGCAACATATAAATGAAAATGTACT 1725 | || |||||||||||||||||| ||||||||| Sbjct 1675 GGCCCCGGATGCAACATATAAATGCAAATGTACT 1708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68829072715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5