BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09840.1

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942768 jgi|Araly1|942768|scaffold_603312.1                        381    4e-105


> Ahg942768 jgi|Araly1|942768|scaffold_603312.1
Length=460

 Score =  381 bits (206),  Expect = 4e-105
 Identities = 350/414 (85%), Gaps = 31/414 (7%)
 Strand=Plus/Plus

Query  150  AGTTTGTGAGAGTATCATCTGGGCTATCGGTTAACCGACTGAACCATCTGATCAATCTCA  209
            |||||||||| ||||||| | |||||||||||  |||||||||||||||||||  |||||
Sbjct  40   AGTTTGTGAGGGTATCATGTCGGCTATCGGTTTCCCGACTGAACCATCTGATCCGTCTCA  99

Query  210  TCAATGCGTGGTCAACGAACTGTCTTGAGTACGATTGATGGTGTGATTGTGGAGGCTGTA  269
            ||||||| ||||| |||||| || |  | ||||| |||||||||||||||||||||||||
Sbjct  100  TCAATGCATGGTCGACGAACAGTATCAATTACGA-TGATGGTGTGATTGTGGAGGCTGTA  158

Query  270  TACAAATGGGTTCCTGGTTCTCTTGGACTTGAATTGGTTG-GT-GTT-GG--AGG-TGGC  323
            |||||||||||||| ||||| ||||||||||||||||||| |  |   ||  ||| ||||
Sbjct  159  TACAAATGGGTTCCGGGTTCCCTTGGACTTGAATTGGTTGCGGAGGGAGGTGAGGGTGGC  218

Query  324  GACGTTGGCGGAAATAATCAACAAGGCCTTCGTGGGAATGATCAGCAAGCCGTCCCATCT  383
            | | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  219  GGCTTTGGCGGAAATAATCAACAAGGCCTTGGTGGGAATGATCAGCAAGCCGTCCCAGCT  278

Query  384  GCCGTCGCTGGAGTTTCGGATAGTGAAGAAGATGAAG-------A-AC-A---T-G--AA  428
            || ||||||||||||||||||||||||| ||||||||       | |  |   | |  ||
Sbjct  279  GCAGTCGCTGGAGTTTCGGATAGTGAAGGAGATGAAGCCGCCTTAGATGAAGATCGTGAA  338

Query  429  GCTGGAGATGACCAACagagtaggagaaagcgaaagagagaacaaaaggagaacaag--g  486
            |||||||||||||||||||| | ||||||||||||||||||| | |||||||| |||  |
Sbjct  339  GCTGGAGATGACCAACAGAGCAAGAGAAAGCGAAAGAGAGAAGAGAAGGAGAAGAAGAAG  398

Query  487  g-tcaggaggaagagaaggagaaggagatgaagattcagaaaaCCTGATCACTC  539
            | |||||||||||||||||||||| | | ||   ||||||||| ||||| ||||
Sbjct  399  GGTCAGGAGGAAGAGAAGGAGAAG-A-A-GA---TTCAGAAAATCTGATAACTC  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25466108556


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5