BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09870.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611 713 0.0
Ahg930654 jgi|Araly1|930654|scaffold_303111.1 56.5 4e-07
> Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611
Length=1002
Score = 713 bits (386), Expect = 0.0
Identities = 834/1036 (81%), Gaps = 87/1036 (8%)
Strand=Plus/Plus
Query 16 CTTTCACAAGACTTGTTAGAGGAGATACTCTGTCGCGTTCCTGCCATATCCCTAAAAAAG 75
||||| || || ||||||||||||||||||||||||||||| || | ||| || ||| |
Sbjct 13 CTTTCGCAGGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCT-GAAACG 71
Query 76 -TTACGATCTACTTGCAAGCTATGGAACAGTTTATTCATCGACAAGAGGGTTAGGAATGA 134
||||||||||||||||||| ||||||||||||||||| |||||||| || || |||
Sbjct 72 ATTACGATCTACTTGCAAGCGATGGAACAGTTTATTCAACGACAAGA-GG---GG--TGA 125
Query 135 ACTTAGGCGAGTCACTGTATCTCAAGTCTTTCACTGTGATGGCTTATTGTTATACATCAA 194
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 126 ACTTAGGCGAGTCAGTATATCTCAAGTCTTTCACTGTGATGGCTTATTGATATACATCAA 185
Query 195 CGGAGTAGACACTATAATGGTTGTTTGGAACCCATTTATGGG-ACAAA-CGAGGTGGGTC 252
| || ||||||||| ||||| ||||||||||| |||||||| | ||| | |||||| ||
Sbjct 186 CAAAGGAGACACTATGATGGTGGTTTGGAACCCGTTTATGGGTA-AAATC-AGGTGG-TC 242
Query 253 C-AACCCATAGCTCGTGACCAGACCCA-TAA-A-TATGTTCTTGGATCCTACCAAGAC-A 307
| ||| ||||| ||||||| |||| || || | |||||||||||||||||||||||| |
Sbjct 243 CCAACACATAGATCGTGACAAGACACACTACGACTATGTTCTTGGATCCTACCAAGACGA 302
Query 308 TAAAATCCCGCA-TAACTAGCTATAAAATACTGAGATACAGATACACGTTATGTGGCAGC 366
|||| || ||| || ||||||| ||| | ||||||||| | ||| || ||||||
Sbjct 303 TAAA-TCAGGCAATA-CTAGCTACAAAGTTTTGAGATACA--T----GTTTTGGGGCAGC 354
Query 367 AAACTAGCATTC-GAAATTTGTGAGCTT-TACTCTAGTTCTTGGAGGGTTCTTGATATCA 424
||| | ||| |||||||||||| || |||||||||||||||||| |||||||| |||
Sbjct 355 AAAAAAA-ATTTAGAAATTTGTGAG-TTGTACTCTAGTTCTTGGAGGATTCTTGATGTCA 412
Query 425 CTATGGACTTCGATC-TTT-AT-CATAATTC--CT-GCGTGTCTTTGAAGGGTAAGACTT 478
||| ||||| | | | ||| || | | | || | ||| |||| |||| ||||||||||
Sbjct 413 CTACGGACTGC-A-CGTTTTATGC-TGAGTCGACCCGCGCGTCTCTGAAAGGTAAGACTT 469
Query 479 ACTGGCTCACTTTCGATAAAAAAGACCGGGAGCTCGATATGTTTAGTTTTGATTATGCAA 538
||||| | |||| ||| |||||||| || || || ||||| |||||||||||||| |||
Sbjct 470 ACTGGTTTGCTTTTGATGAAAAAGACTGGCAGATCTATATGGTTAGTTTTGATTATACAA 529
Query 539 CAGAGAGTTTTGGAAATCGTATGCCTCTTCCCTATCAGTTTCCTAGATG-TAGTTATGAA 597
||||||| ||||||| ||||||| |||||||||||||||||||| || ||||||| ||
Sbjct 530 CAGAGAGATTTGGAAGTCGTATGAGTCTTCCCTATCAGTTTCCTAT-TGGTAGTTATAAA 588
Query 598 ACTGTGGCTCTATCC-GTTGTTCGAGAAGAGAAACTATCCGTATTATTACAGCTCAGAGG 656
||||| |||||||| || ||| ||||||||||||| || || ||||||| |||||||
Sbjct 589 ACTGTAGCTCTATCTTGT-GTTAGAGAAGAGAAACTTTCAGTGCTATTACATCTCAGAGA 647
Query 657 TACATCAAGGAAAGAAATATGGGTAACAAATAAGATTAATGAGACCACTCAAGTCTTGTC 716
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 648 TACATCAAGGAAAGAGATATGGGTAACAAATAAGATTGATGAGACAACTCAAGTCTTGTC 707
Query 717 GTGGAGCAAGGTGTTAACGCTGGATAATTCTGATTTTGGTTATTG---CC---CTGGACT 770
||||| |||||| ||||| |||||| | ||||| ||||| ||| || |||| ||
Sbjct 708 GTGGAACAAGGTCTTAACTCTGGATTACCCTGATCTTGGTCGTTGTTTCCTAACTGGTCT 767
Query 771 AAGtttttttGT-CGACGAGGAGAA--GAAACAAGTCTTGTGTTTTGAGAAATGTCGTGT 827
||||||||| || |||||||||||| |||| || || |||||| ||||| | ||| |
Sbjct 768 AAGTTTTTT-GTTCGACGAGGAGAATAGAAA-AA-TCGTGTGTTGTGAGAGA---CGTAT 821
Query 828 GTTCCACATCCACACCAATGATGAGGTCTTCGAAAACAAAGTATATACTGTTGGGGAGGA 887
|| | | | | || |||| | ||| | || || | ||||| ||||||
Sbjct 822 GT-C----TG-A-A-----GACGAGGCCGCCGA---CTGGGTTTACATTGTTGAGGAGGA 866
Query 888 TAATAAAGTCACACAACTGCGTTTTG-AACAATCTTTC---T--G-TCC-TAAAA-T-GG 937
||||||||||||||||||| |||||| || ||| | | | | | | | | | ||
Sbjct 867 TAATAAAGTCACACAACTGTGTTTTGGAA-AATGTAACGACTTTGATACGTTGGAGTCGG 925
Query 938 ATCCATATGTGTTTGGTTATGTTCCAAGTTTGGTTCAAATCGAACAACCTCGACGCAAA- 996
|||||||| ||||||||||||| |||||||||||||||||||| || ||||||| ||||
Sbjct 926 ATCCATATCTGTTTGGTTATGTGCCAAGTTTGGTTCAAATCGAGCATCCTCGACACAAAA 985
Query 997 CGTAAAAGAGGTGACT 1012
| ||||||||||||||
Sbjct 986 C-TAAAAGAGGTGACT 1000
> Ahg930654 jgi|Araly1|930654|scaffold_303111.1
Length=437
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 158 AAGTCTTTCACTGTGATGGCTTATTGTTAT 187
||||||||||||||||||||||||||||||
Sbjct 326 AAGTCTTTCACTGTGATGGCTTATTGTTAT 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5