BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09890.1

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489838 jgi|Araly1|489838|fgenesh2_kg.6__2972__AT4G09890.1         664    0.0  


> Ahg489838 jgi|Araly1|489838|fgenesh2_kg.6__2972__AT4G09890.1
Length=517

 Score =  664 bits (359),  Expect = 0.0
 Identities = 486/541 (90%), Gaps = 34/541 (6%)
 Strand=Plus/Plus

Query  1    GCTTCTTCACCCACATAGCTATAACAAGAGAGAGAGATAGACATAGAGCAAAAATTAGTT  60
            |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct  1    GCTTCTCCACTCACATAGCTATAACAAGAGAGAGAGATAGACATAGGGCAAAAATTATTT  60

Query  61   TCTTAGAAGTTACAAAATCAAAGATCAGAACCAAAGAGCCTAAAGATGATGAAGGGAAGC  120
            |||||||||||       | || |  ||   |||||||||||||||||||||||||||||
Sbjct  61   TCTTAGAAGTT------GC-AA-A--AG---CAAAGAGCCTAAAGATGATGAAGGGAAGC  107

Query  121  AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACAGATGAATTTGGTTATGATCAGAAC  180
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  108  AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACCGATGAATTTGGTTATGATCAGAAC  167

Query  181  CGTTCAAACTCCTATAACTTCAATGGGCCTTGTATCAACACAGATCCGGAGATGAAAAGA  240
            || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct  168  CGCTCAAACTCTTATAACTTCAATGGGCCTTGCATCAACACAGATCCAGAGATGAAGAGA  227

Query  241  AAGAAGAGAGTTGCTTCTTATAATCTTTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  228  AAGAAGAGAGTTGCTTCTTATAATCTCTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC  287

Query  301  AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC  347

Query  361  AACGTCTAGATTAGTCCACTTTGCTC--CTGATCTTTTTATT-T-CTTC---CT-TTTT-  411
            ||||||||||||| ||||||||| ||  ||||||||||| || | ||||   || |||| 
Sbjct  348  AACGTCTAGATTACTCCACTTTGATCTTCTGATCTTTTTCTTCTTCTTCTTTCTATTTTT  407

Query  412  ATTACACTAA-GATCTTAGTGAAACTTAACATGTAAATAAAgtgtgtgagattgtgtatg  470
            |||||||||| | || |||||||||||||||||||||| |||||||| |  |||||||||
Sbjct  408  ATTACACTAAAG-TCGTAGTGAAACTTAACATGTAAATTAAGTGTGT-ATCTTGTGTATG  465

Query  471  tgtgtgtgtgtgtCTAAAGTTTTGTATGTTACTCAAATGGAAATGTCAATTTGCTTTAAT  530
            ||||| | |      || | ||||||||||||||||||||||||||||||||| ||||||
Sbjct  466  TGTGT-T-T------AA-GATTTGTATGTTACTCAAATGGAAATGTCAATTTGGTTTAAT  516

Query  531  T  531
            |
Sbjct  517  T  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19383039212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5