BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09900.1
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1 1700 0.0
Ahg922500 jgi|Araly1|922500|scaffold_103781.1 955 0.0
> Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1
Length=1266
Score = 1700 bits (920), Expect = 0.0
Identities = 1071/1145 (94%), Gaps = 6/1145 (1%)
Strand=Plus/Plus
Query 152 TTTTCTTGAGTTTCCATTAAAGTCCACTTCTTTGGGCTAAATTCAGGGTTTTGTGAAGAA 211
||||||||| |||||| |||| ||||||||| ||||||||||||| || ||||| || ||
Sbjct 125 TTTTCTTGAATTTCCAATAAAATCCACTTCTGTGGGCTAAATTCAAGGATTTGT-AAAAA 183
Query 212 TGGGTAACAGAGTAATCTGCATGAAGAAGAAAGATGTTGTTATCAGAAGTGGAGGAGATG 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TGGGTAACAGAGTAATCTGCATGAAGAAGAAAGATGTTGTTATCAGAAGTGGAGGAGATG 243
Query 272 GGTCCAGAAGCAAGAGAGTGAATCGTTCACAGAGGAAGTTGCTTGCTGATGAAGAGAATT 331
| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 244 GATCCAGAAGCAAGAGAGTGAATTGTTCACAAAGGAAGTTGCTTGCTGATGAAGAGAATT 303
Query 332 TGCATCGA-AGAGCTTTGTCTATGGCTATTCATCAAGCTCAAGTTTCTCAGAGATTTGAT 390
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 TGCATCGACA-AGCTTTGTCTATGGCTATTCATCAAGCTCAGGTTTCTCAGAGATTTGAT 362
Query 391 GGATCCATGTCTAGACGAATCGGGTCTACTAGCTCTAGAAGAGGAACACTCTCTGACTCA 450
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 GGATCTATGTCTAGACGTATCGGGTCTACTAGCTCTAGAAGAGGAACACTCTCTGACCCA 422
Query 451 TTTTCTAATAACAAGCAGGTTCCTGAGTTTTTGGAGAGCTTGAAGGTTAAGAAATTCGTT 510
||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 423 TTTGCTAATAACAAACAGGTACCTGAGTTTTTGGAGGGCTTGAAGGTTAAGAAATTCGTT 482
Query 511 TTGGTGCATGGTGAAGGGTTTGGGGCATGGTGTTGGTACAAAACTATTGCGTCATTGGAG 570
||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 483 TTGGTTCATGGTGAAGGGTTTGGGGCATGGTGTTGGTACAAAAATATTGCTTTATTGGAA 542
Query 571 GAGTCTGGACTGTCTCCTGTTACGGTTGACCTCGCTGGATCTGGATTTAATATGACAGAC 630
||||||||||| | ||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct 543 GAGTCTGGACTATATCCTGTTACAGTTGATCTGGCTGGTTCTGGATTTAATATGACTGAC 602
Query 631 GCAAATAGTGTTTCCACCTTAGAAGAATATTCAAAACCGTTGATCGAGCTCATTCAAAAT 690
|| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 GCCAATAGCGTTTCCACGTTAGAAGAATATTCAAAACCGTTGATCGAGCTCCTTCAAAAT 662
Query 691 CTTCCTGCTGAAGAAAAGGTGATTCTGGTAGGTCACAGTACTGGAGGGGCATGTGTTTCA 750
||||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 663 CTTCCCGAGGAAGAAAAGGTTATTCTGGTGGGTCACAGTACTGGAGGTGCATGTGTTTCC 722
Query 751 TATGCGTTAGAGCGGTTTCCAGAGAAAATCTCAAAAGCTATATTCATTTGTGCAACTATG 810
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 723 TATGCGTTAGAGCGGTATCCAGAGAAAATCTCAAAAGCTATATTCATATGTGCAACTATG 782
Query 811 GTTACTGATGGACAAAGACCCTTCGATGTCTTCGCTGATGAGCTTGGTTCTGCAGAACGG 870
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 783 GTTACTGATGGACAAAGACCCTTTGATGTCTTTGCTGATGAGCTTGGTTCTGCAGAACGG 842
Query 871 TTCATGAAAGAGTCACAGTTCTTGATCTATGGAAACGGCAAGGACAACCCCGCGACAGGG 930
|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || |||
Sbjct 843 TTCATGAAAGAGTCGCAGTTCTTGATCTATGGGAACGGCAAAGACAAGCCCGCTACGGGG 902
Query 931 TTCATGTTCGAGAAACAACACATGAAAGGCTTGTACTTCAATCAGTCACCAAATAAGGAC 990
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 903 TTCATGTTTGAGAAACAACACATGAAAGGCTTGTACTTCAATCAGTCACCCAATAAGGAC 962
Query 991 ATTGCATTGTCAATGATCTCGATGCGGCCTGTACCATTAGGTCCCATGATGGAGAAGTTG 1050
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 963 ATTGCATTGTCGACGATATCGATGCGACCTGTACCATTAGGTCCCATGATGGAGAAGCTG 1022
Query 1051 TCACTTAGTGCAGAAAGATATGGGAAAGGTCGGAGATTCTATGTCCAGACGCTCGATGAC 1110
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1023 TCGCTTAGTGCAGAAAGGTATGGGAAAGGTCGAAGATTCTATGTTCAGACGCTCGATGAC 1082
Query 1111 TTGGCTCTTTCACCGGACGTTCAAGAGAAACTGGTTC-GAGAGAATAGTCCCGAAGCAGT 1169
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1083 TTGGCTCTTTCACCGGACGTTCAAGAGAAACTGGT-CAGAGAGAATAGTCCTGAAGCAGT 1141
Query 1170 TTTTAAGATCAAAGGAAGTGATCATTGCCCATTCTTCTCTAAACCTCAGTCTCTTCACAA 1229
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1142 TTTTAAGATCAAAGGAAGTGATCATTGCCCTTTCTTCTCTAAACCTCAGTCTCTTCACAA 1201
Query 1230 GATCCTTCTTGAAATAGCACAGATTCCTTAAAAATAGA-AAATCTTGAATTCAGAATGTA 1288
|||||||||||| ||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 1202 GATCCTTCTTGAGATAGCTCAGATTCCTTAAAAAGACACAAATCTTGAATTCAGAATGTA 1261
Query 1289 TAATA 1293
|||||
Sbjct 1262 TAATA 1266
Score = 148 bits (80), Expect = 8e-35
Identities = 114/129 (88%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 1 GAAACAATTAACAAACTTTGGCTGCTTTGTCTTAAATCTGAATCGTCCTTATTCATCCTA 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAAACAATTAACATTCTTTGGCTGCTTTGTCTTAAATCTGAATCGTCCTTATTCTTCCTA 60
Query 61 ATCAATGACACCGTTTTActtcttcttc-t-t-c-t-tc-tctctATCATCAAGTCAAGA 114
|| ||||||||| |||| |||||||||| | | | | || |||||||| ||||||||||
Sbjct 61 ATTAATGACACCATTTTGCTTCTTCTTCCTCTACCTCTCCTCTCTATCCCCAAGTCAAGA 120
Query 115 t-ttttttC 122
| |||||||
Sbjct 121 TCTTTTTTC 129
> Ahg922500 jgi|Araly1|922500|scaffold_103781.1
Length=1088
Score = 955 bits (517), Expect = 0.0
Identities = 896/1075 (83%), Gaps = 42/1075 (4%)
Strand=Plus/Plus
Query 207 AAGAATGGGTAAC-AGAGTAATCTGC-ATGAAGAAGAAAGATGTTGTTATCAGAAG-TGG 263
||| ||||||||| ||| |||||| | |||| ||||||||| || || ||| |||
Sbjct 22 AAG-ATGGGTAACAAGA-TAATCT-CAATGATGAAGAAAGA------TAGCA-AAGATGG 71
Query 264 AGGA-GATGGGTC-CAGAAGCAAGAGAGTGAATCGTTCACAGAGGAAGTTGCTTGCTGAT 321
|||| || || || || ||||| ||| ||||||| ||||| ||||| || |||||||||
Sbjct 72 AGGAGGA-GGATCTAAG-AGCAAAAGAATGAATCGGTCACAAAGGAAATTACTTGCTGAT 129
Query 322 GAAGAGAAT-TTGCATCGAAGAGCT-TTGTCTATGGCTATTCATCAAGCTCAAG-TTTCT 378
|||||| || |||||||| ||||| || || ||||| ||||||||||||| || |||||
Sbjct 130 GAAGAG-ATGTTGCATCGTCGAGCTCTT-TCCATGGCGATTCATCAAGCTC-AGCTTTCT 186
Query 379 CAGAGATTTGATGGATCCATGTCTAGACGAATCGGGTCTACTAGCT-CTAGAAGAGGAAC 437
||||||||||||||||| |||||||||||| ||||||||||||| | | |||| | ||||
Sbjct 187 CAGAGATTTGATGGATCTATGTCTAGACGAGTCGGGTCTACTAG-TACCAGAAAACGAAC 245
Query 438 ACTCTCTGACTCATTTTCTAATAACAAGCAGGTTCCTGAGTTTTT-GGAGAGCTTGA-AG 495
||||||||| | ||||||||| ||||||||| ||||| ||||| |||||||||| |
Sbjct 246 TCTCTCTGACCCGTTTTCTAATGGCAAGCAGGTACCTGA-TTTTTCAGAGAGCTTGATA- 303
Query 496 GTTAAGAAATTCGTTTTGGTGCATGGTGAAGGGTTTGGGGCATGGTGTTGGTACAAAACT 555
|| |||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| | |
Sbjct 304 GTGAAGAAATTTGTTCTGGTGCACGGTGAAGGATTTGGGGCATGGTGTTGGTACAAGA-T 362
Query 556 -ATTGCGTCATTGGAGGAGTCTGGACTGTCTCCTGTTACGGTTGACCTCGCTGGATCTGG 614
|||| ||| |||| ||||| |||||||||||| ||| ||||||||| |||| | |||
Sbjct 363 GGTTGCTTCACTGGAAGAGTCAGGACTGTCTCCTACTACAGTTGACCTCACTGGGTGTGG 422
Query 615 ATTTAATATGACAGACGCAAATAGTGTTTCCACCTTAGAAGAATATTCAAAACCGTTGAT 674
|||||||||||| ||| |||| ||||| || ||||| || |||||||||| |||||||||
Sbjct 423 ATTTAATATGACGGACACAAACAGTGTCTCTACCTTGGAGGAATATTCAAGACCGTTGAT 482
Query 675 CGAGCTCATTCAAAATCTTCCTGCTGAAGAAAAGGTGATTCTGGTAGGTCACAGTACTGG 734
||||||| || ||||||| |||| ||||| ||||| ||||| || ||||| ||||||||
Sbjct 483 CGAGCTCCTTGAAAATCTCCCTGAAGAAGAGAAGGTTATTCTAGTGGGTCATAGTACTGG 542
Query 735 AGGGGCATGTGTTTCATATGCGTTAGAGCGGTTTCCAGAGAAAATCTCAAAAGCTATATT 794
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGGTGCTTCAATTTCATATGCGTTAGAGCGGTTTCCAGAGAAAATCTCAAAAGCTATATT 602
Query 795 CATTTGTGCAACTATGGTTACTGATGGACAAAGACCCTTCGATGTCTTCGCTGATGAGCT 854
| |||||||| |||||| ||||||| ||||||||||| ||||| ||| |||| |||||
Sbjct 603 TGTATGTGCAACCATGGTTTCTGATGGCCAAAGACCCTTTGATGTTTTCTCTGAAGAGCT 662
Query 855 TGGTTCTGCAGAACGGTTCATGAAAGAGTCACAGTTCTTGATCTATGGAAACGGCAAGGA 914
|||||| ||||| ||||||||||||||||| ||||||||||| ||||| || || || |
Sbjct 663 TGGTTCCGCAGAGCGGTTCATGAAAGAGTCGCAGTTCTTGATTTATGGGAATGGAAAAAA 722
Query 915 CAACCC-CGCGACAGGGTTCATGTTCGAGAAACAACACATGAAAGGCTTGTACTTCAATC 973
||| || | | || ||||||||||| ||||| | |||||||||||||||||| |||||||
Sbjct 723 CAAGCCTC-CTACGGGGTTCATGTTTGAGAAGCCACACATGAAAGGCTTGTATTTCAATC 781
Query 974 AGTCACCAAATAAGGACATTGCATTGTCAATGATCTCGATGCGGCCTGTACCATTAGGTC 1033
| ||||| || ||||| || |||||| |||||||||| ||||| ||||||||| | || |
Sbjct 782 AATCACCCAACAAGGATATAGCATTGGCAATGATCTCAATGCGACCTGTACCACTCGGAC 841
Query 1034 CCATGATGGAGAAGTTGTCACTTAGTGCAGAAAGATATGGGAAAGGTCGGAGATTCTATG 1093
| |||||||||||| | || || | ||||||||||| |||||||| | ||||||||||
Sbjct 842 CAATGATGGAGAAGGTATCTCTGACCGCAGAAAGATACGGGAAAGGGAGAAGATTCTATG 901
Query 1094 TCCAGACGCTCGATGACT-TG-GCTCTTTCACCGGACGTTCAAGAGAAACTGGTTCGAGA 1151
||||||| || |||||| || ||||| |||| || ||||||||||| | || ||||
Sbjct 902 TCCAGACACTAGATGACCGTGCGCTCT--CACCAGATGTTCAAGAGAAGGTAGTGAGAGA 959
Query 1152 GAATAGTCCC-GAAGCAGTTTTTAAGATCAAAGGAAGTGATCATTGCCCATTCTTCTCTA 1210
||| || ||| |||| ||| || ||||||||||||||||||||||| || |||||||| |
Sbjct 960 GAACAG-CCCTGAAGGAGTCTTCAAGATCAAAGGAAGTGATCATTGTCCTTTCTTCTC-A 1017
Query 1211 AA-CCTCAGTCTCTTCACAAGATCCTTCTTGAAATAGCACAGATTCCTTAA-AAA 1263
|| ||||| ||||| ||||| || ||||| || || ||||||||||||||| |||
Sbjct 1018 AAGCCTCAATCTCTCCACAAAATTCTTCTCGAGATTGCACAGATTCCTTAACAAA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5