BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09940.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942781 jgi|Araly1|942781|scaffold_603325.1 1288 0.0
Ahg942782 jgi|Araly1|942782|scaffold_603326.1 233 2e-60
> Ahg942781 jgi|Araly1|942781|scaffold_603325.1
Length=1928
Score = 1288 bits (697), Expect = 0.0
Identities = 960/1084 (89%), Gaps = 30/1084 (3%)
Strand=Plus/Plus
Query 8 CAGAATCTCTCCCAGAGGATAAACCGGTTTTGGAGGTTGCTTTGACAGAGCTGCCAATGG 67
||||| || | |||| |||| || |||| ||||||||| |||||||||| | || ||||
Sbjct 476 CAGAAACTATGCCAGGGGATGGACTGGTTATGGAGGTTGGTTTGACAGAGTTCCCTATGG 535
Query 68 TCG-CAGAATCTTTGCCAGAGGATGGTTCTGGTTTGGAGGTTACTTGTGATTTACGTTTG 126
| | | ||| |||||||||| |||||||||| |||||||||| ||||||| ||||||||
Sbjct 536 T-GACTGAAACTTTGCCAGATGATGGTTCTGTTTTGGAGGTTTCTTGTGAGTTACGTTTA 594
Query 127 GAGCATAAACCTGCAAGAACCCTACTTTTGGTTGGACGTTCTGGTAATGGGAAAAGCGCG 186
||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 595 GAGCAGAAACCTGCAAGAACCCTACTTTTGGTAGGGCGTTCAGGTAACGGGAAAAGCGCG 654
Query 187 ACAGGGAATAGCATTCTTGGAAGAA-AAGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 245
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 655 ACAGGGAATAGCATTCTTGGAA-AACCCGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 713
Query 246 GACTACAGCCTGCGAGCT-ACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTA 304
|||||||| ||| ||| | ||||||||||| |||||||||||||||||||| || ||||
Sbjct 714 GACTACAGTCTGTGAG-TCACAGAGTTCAATTCTACCCAATGGCCAGATCATCAATGTTA 772
Query 305 TTGATACTCCTGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTC 364
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 773 TTGATACTCCTGGTCTATTTAGTCTGTCTCCATCCACCGAGTTTACGTGCAGAGAG-CTC 831
Query 365 -TGAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTT-GTGTTCTCCTT 422
| ||||||||||||||||||||||||||||||||||| || ||| || || || |||||
Sbjct 832 TTAAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCAGTCCTT-TTGGTATTTTCCTT 890
Query 423 GAAG-AACCGGCTCACAGAAGAGGAGAAATCTGCGCTTTTTGCATTAAAGATCCTT-TTC 480
| || |||||||| |||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 891 G-AGAAACCGGCTAACAGAAGAGGAGAAATCTGCGCTTTTCGCATTAAAGAT-TTTGTTT 948
Query 481 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTTACAAATGAAGATTCCCTTGAGGAT 540
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 949 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTAACAAATGAAGATTCTCTTGAGGAG 1008
Query 541 GATGGTGATACATTTGAGGAATATTTGGAAGACTCTCCTGATTTCAAGGAAATTCTCGA- 599
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 1009 GATGGTGACACATTTGAGGAATACTTGGAAGACTCTCCTGATTTCAAGGAAATTTTCAAG 1068
Query 600 GCCATGCAATGATCGCAAGGTGTTGTTT-AGAAA-TAGGTCTAATGCCCCTGTGAGTCAG 657
||| |||||||| ||||||||||||||| | ||| ||| | || |||| || |||||||
Sbjct 1069 GCC-TGCAATGACCGCAAGGTGTTGTTTCA-AAACAAGG-CCAAAGCCCATGAGAGTCAG 1125
Query 658 AAAGCTAAGCAAGTTCAGGAGCTTCTTAACTATGTTGAAGAAATTGCAAGGTTGAATGGA 717
||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 1126 AAAGCTAAGCAAGTTCAGGAGCTCCTAAACTATGTTGAAGAGATTGCAAGGAAGAATGGG 1185
Query 718 AAATCGTAT-ATGGCTGATTTATCTCACGAGA-TAAGGGAAAATGAGACTGCATTCCAGA 775
||| | | | |||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1186 AAACCCT-TCATGGATGATTTATCTCACGA-ACTAAGGGAAAATGAGACTGCATTCCAGA 1243
Query 776 TAAAGCAGCA-GGAGATTCTAGAGATGAAGGGCTTGTACACAAGACAAGAGATGCT-TCA 833
|||||||| | ||| ||| |||| |||||||||| |||||||| | |||||||| | |||
Sbjct 1244 TAAAGCAG-AGGGATATTTTAGAAATGAAGGGCTGGTACACAAAAGAAGAGATG-TCTCA 1301
Query 834 AATGAAGAAAGATATGGAGAAGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGgagag 893
|| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AAAGCTGAAAGATATGGAGAGGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGGAGAG 1361
Query 894 ggtggagactgagctgagagagacaaaagagaggctagagcagcagctgaaag-aagaga 952
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1362 GGTGGAGACTCAGCTGAGAGAGACAAAAGAGAGGCTAGAGCAGCAGCT-AAACCAAGAGC 1420
Query 953 aaTCTGCTAGACTTGAATTGGAGAAAAGAGCAAAAGAAGTCGAGAAACGGTCAAGTGATG 1012
|| || | ||||||||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1421 AAGCTTCAAGACTTGAAATGGAGAAAAGAGCAAAGGAAGTCGAGAAACAGTCAAGTGATG 1480
Query 1013 TAGTAAAGGAGCTGAACGATGAGCAAGCTAAAAGACTTGAATCGGAGAGTAGAGCAAAGG 1072
|||||||| |||||||||| |||||| || ||||||||||| ||||| ||||||||||
Sbjct 1481 TAGTAAAGAAGCTGAACGAAGAGCAAACTGCAAGACTTGAATTGGAGAAAAGAGCAAAGG 1540
Query 1073 AAGC 1076
||||
Sbjct 1541 AAGC 1544
> Ahg942782 jgi|Araly1|942782|scaffold_603326.1
Length=820
Score = 233 bits (126), Expect = 2e-60
Identities = 183/209 (88%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 255 CTGCGAGCTACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTATTGATACTCC 314
||| |||||||||||||| |||||||| |||||||||||| | || ||||||||||||||
Sbjct 29 CTGTGAGCTACAGAGTTCGACGCTACCTAATGGCCAGATCCTCAATGTTATTGATACTCC 88
Query 315 TGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTCTGAGGTGCTT 374
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 89 TGGTCTGTTTAGTCTGTCTCCATCAACCGAGTTTACGTGCAGAGAGATTTTGAGGTGCTT 148
Query 375 CTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTTG-TGTTCTCCTTGAAGAACCGGC 433
||||||||||||| ||||||||||| || || ||| | || ||||||| | | |
Sbjct 149 AGCTCTGACCAAAGATGGGATTGATGCAGTACTA-TTGGTATTTTCCTTGA-G----G-C 201
Query 434 TCACAGAAGAGGAGAAA-TCTGCGCTTTT 461
| ||||||||||||||| |||||||||||
Sbjct 202 TAACAGAAGAGGAGAAAATCTGCGCTTTT 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5