BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09940.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg942781 jgi|Araly1|942781|scaffold_603325.1 1288 0.0 Ahg942782 jgi|Araly1|942782|scaffold_603326.1 233 2e-60 > Ahg942781 jgi|Araly1|942781|scaffold_603325.1 Length=1928 Score = 1288 bits (697), Expect = 0.0 Identities = 960/1084 (89%), Gaps = 30/1084 (3%) Strand=Plus/Plus Query 8 CAGAATCTCTCCCAGAGGATAAACCGGTTTTGGAGGTTGCTTTGACAGAGCTGCCAATGG 67 ||||| || | |||| |||| || |||| ||||||||| |||||||||| | || |||| Sbjct 476 CAGAAACTATGCCAGGGGATGGACTGGTTATGGAGGTTGGTTTGACAGAGTTCCCTATGG 535 Query 68 TCG-CAGAATCTTTGCCAGAGGATGGTTCTGGTTTGGAGGTTACTTGTGATTTACGTTTG 126 | | | ||| |||||||||| |||||||||| |||||||||| ||||||| |||||||| Sbjct 536 T-GACTGAAACTTTGCCAGATGATGGTTCTGTTTTGGAGGTTTCTTGTGAGTTACGTTTA 594 Query 127 GAGCATAAACCTGCAAGAACCCTACTTTTGGTTGGACGTTCTGGTAATGGGAAAAGCGCG 186 ||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct 595 GAGCAGAAACCTGCAAGAACCCTACTTTTGGTAGGGCGTTCAGGTAACGGGAAAAGCGCG 654 Query 187 ACAGGGAATAGCATTCTTGGAAGAA-AAGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 245 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 655 ACAGGGAATAGCATTCTTGGAA-AACCCGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 713 Query 246 GACTACAGCCTGCGAGCT-ACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTA 304 |||||||| ||| ||| | ||||||||||| |||||||||||||||||||| || |||| Sbjct 714 GACTACAGTCTGTGAG-TCACAGAGTTCAATTCTACCCAATGGCCAGATCATCAATGTTA 772 Query 305 TTGATACTCCTGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTC 364 |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || Sbjct 773 TTGATACTCCTGGTCTATTTAGTCTGTCTCCATCCACCGAGTTTACGTGCAGAGAG-CTC 831 Query 365 -TGAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTT-GTGTTCTCCTT 422 | ||||||||||||||||||||||||||||||||||| || ||| || || || ||||| Sbjct 832 TTAAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCAGTCCTT-TTGGTATTTTCCTT 890 Query 423 GAAG-AACCGGCTCACAGAAGAGGAGAAATCTGCGCTTTTTGCATTAAAGATCCTT-TTC 480 | || |||||||| |||||||||||||||||||||||||| ||||||||||| || || Sbjct 891 G-AGAAACCGGCTAACAGAAGAGGAGAAATCTGCGCTTTTCGCATTAAAGAT-TTTGTTT 948 Query 481 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTTACAAATGAAGATTCCCTTGAGGAT 540 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 949 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTAACAAATGAAGATTCTCTTGAGGAG 1008 Query 541 GATGGTGATACATTTGAGGAATATTTGGAAGACTCTCCTGATTTCAAGGAAATTCTCGA- 599 |||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | Sbjct 1009 GATGGTGACACATTTGAGGAATACTTGGAAGACTCTCCTGATTTCAAGGAAATTTTCAAG 1068 Query 600 GCCATGCAATGATCGCAAGGTGTTGTTT-AGAAA-TAGGTCTAATGCCCCTGTGAGTCAG 657 ||| |||||||| ||||||||||||||| | ||| ||| | || |||| || ||||||| Sbjct 1069 GCC-TGCAATGACCGCAAGGTGTTGTTTCA-AAACAAGG-CCAAAGCCCATGAGAGTCAG 1125 Query 658 AAAGCTAAGCAAGTTCAGGAGCTTCTTAACTATGTTGAAGAAATTGCAAGGTTGAATGGA 717 ||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||| Sbjct 1126 AAAGCTAAGCAAGTTCAGGAGCTCCTAAACTATGTTGAAGAGATTGCAAGGAAGAATGGG 1185 Query 718 AAATCGTAT-ATGGCTGATTTATCTCACGAGA-TAAGGGAAAATGAGACTGCATTCCAGA 775 ||| | | | |||| ||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1186 AAACCCT-TCATGGATGATTTATCTCACGA-ACTAAGGGAAAATGAGACTGCATTCCAGA 1243 Query 776 TAAAGCAGCA-GGAGATTCTAGAGATGAAGGGCTTGTACACAAGACAAGAGATGCT-TCA 833 |||||||| | ||| ||| |||| |||||||||| |||||||| | |||||||| | ||| Sbjct 1244 TAAAGCAG-AGGGATATTTTAGAAATGAAGGGCTGGTACACAAAAGAAGAGATG-TCTCA 1301 Query 834 AATGAAGAAAGATATGGAGAAGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGgagag 893 || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1302 AAAGCTGAAAGATATGGAGAGGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGGAGAG 1361 Query 894 ggtggagactgagctgagagagacaaaagagaggctagagcagcagctgaaag-aagaga 952 |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1362 GGTGGAGACTCAGCTGAGAGAGACAAAAGAGAGGCTAGAGCAGCAGCT-AAACCAAGAGC 1420 Query 953 aaTCTGCTAGACTTGAATTGGAGAAAAGAGCAAAAGAAGTCGAGAAACGGTCAAGTGATG 1012 || || | ||||||||| |||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1421 AAGCTTCAAGACTTGAAATGGAGAAAAGAGCAAAGGAAGTCGAGAAACAGTCAAGTGATG 1480 Query 1013 TAGTAAAGGAGCTGAACGATGAGCAAGCTAAAAGACTTGAATCGGAGAGTAGAGCAAAGG 1072 |||||||| |||||||||| |||||| || ||||||||||| ||||| |||||||||| Sbjct 1481 TAGTAAAGAAGCTGAACGAAGAGCAAACTGCAAGACTTGAATTGGAGAAAAGAGCAAAGG 1540 Query 1073 AAGC 1076 |||| Sbjct 1541 AAGC 1544 > Ahg942782 jgi|Araly1|942782|scaffold_603326.1 Length=820 Score = 233 bits (126), Expect = 2e-60 Identities = 183/209 (88%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 255 CTGCGAGCTACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTATTGATACTCC 314 ||| |||||||||||||| |||||||| |||||||||||| | || |||||||||||||| Sbjct 29 CTGTGAGCTACAGAGTTCGACGCTACCTAATGGCCAGATCCTCAATGTTATTGATACTCC 88 Query 315 TGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTCTGAGGTGCTT 374 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 89 TGGTCTGTTTAGTCTGTCTCCATCAACCGAGTTTACGTGCAGAGAGATTTTGAGGTGCTT 148 Query 375 CTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTTG-TGTTCTCCTTGAAGAACCGGC 433 ||||||||||||| ||||||||||| || || ||| | || ||||||| | | | Sbjct 149 AGCTCTGACCAAAGATGGGATTGATGCAGTACTA-TTGGTATTTTCCTTGA-G----G-C 201 Query 434 TCACAGAAGAGGAGAAA-TCTGCGCTTTT 461 | ||||||||||||||| ||||||||||| Sbjct 202 TAACAGAAGAGGAGAAAATCTGCGCTTTT 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5