BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09950.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895113 jgi|Araly1|895113|Al_scaffold_0006_3109 1613 0.0
> Ahg895113 jgi|Araly1|895113|Al_scaffold_0006_3109
Length=1011
Score = 1613 bits (873), Expect = 0.0
Identities = 966/1012 (95%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGTGGATTCGTCTGCACTTAACGTGGAGAATGATTGGAAACCTGAGAGAACTCTA 60
|||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCGTTGGATTCGTCTGCACTTAACGTGGAGAATGATTGGAAACCTGAAAGAACTCTT 60
Query 61 GTTTTACTCGGTCGAAC-GGGTAATGGTAAAAGTGCAACGGGAAACAGCATCCTAGGTAA 119
||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTTCTACTCGGTCGAACAGGG-AATGGTAAAAGCGCAACGGGAAACAGCATCCTAGGTAA 119
Query 120 AACTATGTTTCAGTCAAAGGCAAGAGGAAAATTCATTACCAAAGAATGTAAGCTACATAA 179
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AACTATGTTTCAGTCAAAAGCAAGAGGAAAATTCATTACCAAAGAGTGTAAGCTACATAA 179
Query 180 ATCCAAGCTACCAAATGGTCTAACCATCAATGTTATCGACACTCCTGGTCTGTTTAGTGC 239
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATCCAAGCTACCAAATGGTCTGACCATCAATGTTATCGACACCCCTGGTCTGTTTAGTGC 239
Query 240 TTCCTCCACAACGGATTTCACCATCAGAGAAATCGTTAGATGCTTACTTCTAGCTAAAGG 299
|||||| || || ||||| || |||||||||||| |||||||||| ||||||||||||||
Sbjct 240 TTCCTCGACGACAGATTTTACAATCAGAGAAATCATTAGATGCTTGCTTCTAGCTAAAGG 299
Query 300 CGGTATCGATGCAGTGCTTCTTGTTTTCTCTTTAAGGAATCGGTTAACAGAAGAAGAACA 359
||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 300 TGGTATCGATGCAGTGCTTCTTATCTTCTCTGTAAGGAATCGGTTAACAGAAGAAGAACA 359
Query 360 ATCAACGCTTCGTACATTAAAGATCCTTTTCGGAAGTCAAATCGTTGACTATATCATCGT 419
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATCAACGCTTCGCACATTAAAGATCCTTTTCGGAAGTCAAATCGTTGACTATATAATCGT 419
Query 420 TGTTTTCACCAATGAGGATGCACTTGAGTGTGGAGAAACTCTGGATGATTATTTGGAAGA 479
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 420 TGTTTTCACCAATGAGGATGCACTCGAGTATGGAGAAACTTTGGATGATTATTTGGAAGA 479
Query 480 TTGTCCTGAGTTTCAGGAGATTCTCGAAGAATGTGATGATCGTAAAGTGTTGTTTGACAA 539
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTCCTGAATTTCAGGAGATTCTCAAAGAATGTGATGATCGTAAAGTGTTGTTTGACAA 539
Query 540 TAGTTATAATGCCCCCGTGAGCAAGAAAGACAGACAAGTCCATGATCTTCTCAACCTCGT 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGTTATAATGCCCCTGTGAGCAAGAAAGACAGACAAGTCCATGATCTTCTCAACCTCGT 599
Query 600 TGAACAAATCTCAAAGAAGAACAATGGAAAATCTTATATGGCTGACTTATCACATGAACT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CGAACAAATCTCAAAGAAGAACAATGGAAAATCTTATATGGCTGACTTATCACATGAGCT 659
Query 660 AAGGGAGAATGAGGCCACTATAAAGGAAAAGCAGAAGCAGATTGAAGAAATGAAAGGTTG 719
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 660 AAGGGAGAATGAGGCCACTATAGAGGAAAAGCAGAAGAAGATTGAAGCAATGAAAGGTTG 719
Query 720 GTCTTCAAAACAAGAGATATCTCAAATGAAAAAGGAACTAGAGAAATCGCATAACGAAAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCTTCAAAACAAGAGATATCTCAAATGAAAAAGGAACTAGAGAAATCGCATAACGAAAT 779
Query 780 GCTTGAGGGGATAAAAGAGAAGATCTCTAATCAGCTGAAGGAATCATTGGAGGATGTGAA 839
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 780 GCTCGAGGGGATAAAAGAGAAGATCGCTAATCAGCTGAAGGAATCATTGGAGGATATGAA 839
Query 840 GGAGCAATTAGCTAAAGCACAAGCCGAGAGAGAGGAAACGGAGAAAAAGATGAATGAAAT 899
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 840 GGAGCAATTAGCTAAGGCACAAGCCGAGAGAGAAGAAACCGAGAAAAAGATGAATGAAAT 899
Query 900 TCAGAAACTATCTTCTGATGAGATCAGGAGGCTAAGAGAACAACTCAACAAAGCTGAGAA 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TCAGAAACTATCTTCTGATGAGATCAGGAGGCTAAGAGAACAACTTAACAAAGCTGAGAA 959
Query 960 AGAAACTGCTTCGTTACGCACCGAACTCAACAAGAAATGTACTGTTCTTTGA 1011
|||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 960 AGAAACTGCTTCGTTACGGACCGAACTCAACAAGAAGTGCACTGTTCTTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5