BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09960.3
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3 1639 0.0
> Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3
Length=1133
Score = 1639 bits (887), Expect = 0.0
Identities = 1064/1146 (93%), Gaps = 25/1146 (2%)
Strand=Plus/Plus
Query 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATA--TCTCT 58
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATATCTCTCT 60
Query 59 ATATATGCAGATTCCAAGCTTGTAATAATTCTTGTCATCATGGGtttttttC-TTGCCTT 117
||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||| |||
Sbjct 61 ATATATGCAGATTCCAAGCTTATAATAATTCTTGTCAGCATGGG-TTTTTTCTTTG-CTT 118
Query 118 GTCTCTCCAGAAAACTTAATTTTCACAATTATGAATTATTTT-CCTTATTTTTG-T-TAC 174
|||||| || ||||||||||||||||||||||||| |||||| |||| ||| || | | |
Sbjct 119 GTCTCTTCACAAAACTTAATTTTCACAATTATGAAATATTTTCCCTT-TTTATGATCT-C 176
Query 175 TTTCTTCTGTTTGATGCTCTTTCCCCATgaaagaaagaaagagaaagaaagaTCACAAGG 234
|| | || |||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 177 TTCCGTC-GTTTGATGCTCTTTCCCCATGAAAGAAAGAGAGACAAAGAAAGATCACCA-- 233
Query 235 GTTTTAT-TTG-GTCACCAGATTAAGAAT-TAGGATGGGAAGAGGAAAGATAGAAATAAA 291
| || || ||| | | |||| ||| |||||||||||||||||||||||||||||
Sbjct 234 GATTAATGTTGTTTGATGTTTTTAA-AATGAAGGATGGGAAGAGGAAAGATAGAAATAAA 292
Query 292 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 352
Query 352 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTC 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTCTTCTC 412
Query 412 CACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGAGAGGTA 471
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 413 CACTCGTGGCCGTCTCTATGAGTACGCCAATAACAACATAAGATCAACCATTGAGAGATA 472
Query 472 CAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTA 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 473 CAAGAAAGCTTGTTCTGATAGCACCAACACCAGCACTGTCCAAGAAATCAATGCCGCGTA 532
Query 532 CTATCAACAAGAATCTGCTAAGCTGAGACAACAGATCCAAACGATTCAAAACTCCAACAG 591
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 CTATCAACAAGAATCTGCAAAGCTGAGACAACAGATCCAAACAATTCAAAACTCCAACAG 592
Query 592 GAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 651
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 593 GAATCTGATGGGAGAATCTTTGAGTTCCCTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 652
Query 652 TCGCCTTGAGAAAGCTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGA 711
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 653 TCGCCTTGAGAAAGCTATCTCCAGGATCAGGTCCAAGAAGCATGAGTTGCTTCTAGTTGA 712
Query 712 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCTAAGAAC 771
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 713 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGATAATGAGAATATCTATCTACGAAC 772
Query 772 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 832
Query 832 GATTAATGCAATTGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGCATTATGACTGC 891
||| | || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 833 GATCACCGCCATCGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGTATTATGACTGC 892
Query 892 TGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCT 951
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 893 TGGTTCTGGTTCTGGTAATGGAGGTTCTTACTCTGACCCCGACAAGAAAATCCTTCATCT 952
Query 952 CGGATAATCTCGTCTGCGAAAAACCGAGCTGCAATAACTCTCTGCATGCATCTGGGGATT 1011
||| ||||||||| | ||||| | ||||||||||||| |||||||| | | |||||||
Sbjct 953 CGGTTAATCTCGTGGGTGAAAATC-GAGCTGCAATAACGCTCTGCAT-C-T--GGGGATT 1007
Query 1012 CTTTGCTCAGATTTATCTCTACATAAAATATGTTTTGGTGCA--A-AATAATTCAAAGTA 1068
|| | |||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1008 CTCTACTCAGATTTATCTCTACATAAAATATGTTTTGGTTTATGATAATAATTCAAAGTA 1067
Query 1069 CAATGAAGGTATTGGTCCTTCAAGACTCATTGCAATTTGTGTTGTGTAATGATTAAGACA 1128
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1068 CAATGAAGGTATTGATCCTTCAAGACTCATTGGAAATTGTGTTGTGTAATGATGAAGACA 1127
Query 1129 TACTCT 1134
||||||
Sbjct 1128 TACTCT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5