BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09960.3 Length=1198 Score E Sequences producing significant alignments: (Bits) Value Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3 1639 0.0 > Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3 Length=1133 Score = 1639 bits (887), Expect = 0.0 Identities = 1064/1146 (93%), Gaps = 25/1146 (2%) Strand=Plus/Plus Query 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATA--TCTCT 58 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATATCTCTCT 60 Query 59 ATATATGCAGATTCCAAGCTTGTAATAATTCTTGTCATCATGGGtttttttC-TTGCCTT 117 ||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||| Sbjct 61 ATATATGCAGATTCCAAGCTTATAATAATTCTTGTCAGCATGGG-TTTTTTCTTTG-CTT 118 Query 118 GTCTCTCCAGAAAACTTAATTTTCACAATTATGAATTATTTT-CCTTATTTTTG-T-TAC 174 |||||| || ||||||||||||||||||||||||| |||||| |||| ||| || | | | Sbjct 119 GTCTCTTCACAAAACTTAATTTTCACAATTATGAAATATTTTCCCTT-TTTATGATCT-C 176 Query 175 TTTCTTCTGTTTGATGCTCTTTCCCCATgaaagaaagaaagagaaagaaagaTCACAAGG 234 || | || |||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct 177 TTCCGTC-GTTTGATGCTCTTTCCCCATGAAAGAAAGAGAGACAAAGAAAGATCACCA-- 233 Query 235 GTTTTAT-TTG-GTCACCAGATTAAGAAT-TAGGATGGGAAGAGGAAAGATAGAAATAAA 291 | || || ||| | | |||| ||| ||||||||||||||||||||||||||||| Sbjct 234 GATTAATGTTGTTTGATGTTTTTAA-AATGAAGGATGGGAAGAGGAAAGATAGAAATAAA 292 Query 292 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 352 Query 352 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 353 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTCTTCTC 412 Query 412 CACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGAGAGGTA 471 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 413 CACTCGTGGCCGTCTCTATGAGTACGCCAATAACAACATAAGATCAACCATTGAGAGATA 472 Query 472 CAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTA 531 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 473 CAAGAAAGCTTGTTCTGATAGCACCAACACCAGCACTGTCCAAGAAATCAATGCCGCGTA 532 Query 532 CTATCAACAAGAATCTGCTAAGCTGAGACAACAGATCCAAACGATTCAAAACTCCAACAG 591 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 533 CTATCAACAAGAATCTGCAAAGCTGAGACAACAGATCCAAACAATTCAAAACTCCAACAG 592 Query 592 GAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 651 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 593 GAATCTGATGGGAGAATCTTTGAGTTCCCTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 652 Query 652 TCGCCTTGAGAAAGCTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGA 711 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 653 TCGCCTTGAGAAAGCTATCTCCAGGATCAGGTCCAAGAAGCATGAGTTGCTTCTAGTTGA 712 Query 712 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCTAAGAAC 771 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct 713 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGATAATGAGAATATCTATCTACGAAC 772 Query 772 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 832 Query 832 GATTAATGCAATTGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGCATTATGACTGC 891 ||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 833 GATCACCGCCATCGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGTATTATGACTGC 892 Query 892 TGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCT 951 ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 893 TGGTTCTGGTTCTGGTAATGGAGGTTCTTACTCTGACCCCGACAAGAAAATCCTTCATCT 952 Query 952 CGGATAATCTCGTCTGCGAAAAACCGAGCTGCAATAACTCTCTGCATGCATCTGGGGATT 1011 ||| ||||||||| | ||||| | ||||||||||||| |||||||| | | ||||||| Sbjct 953 CGGTTAATCTCGTGGGTGAAAATC-GAGCTGCAATAACGCTCTGCAT-C-T--GGGGATT 1007 Query 1012 CTTTGCTCAGATTTATCTCTACATAAAATATGTTTTGGTGCA--A-AATAATTCAAAGTA 1068 || | |||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 1008 CTCTACTCAGATTTATCTCTACATAAAATATGTTTTGGTTTATGATAATAATTCAAAGTA 1067 Query 1069 CAATGAAGGTATTGGTCCTTCAAGACTCATTGCAATTTGTGTTGTGTAATGATTAAGACA 1128 |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct 1068 CAATGAAGGTATTGATCCTTCAAGACTCATTGGAAATTGTGTTGTGTAATGATGAAGACA 1127 Query 1129 TACTCT 1134 |||||| Sbjct 1128 TACTCT 1133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44718181641 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5