BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09965.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327171 jgi|Araly1|327171|fgenesh1_pm.C_scaffold_6002391 215 4e-55
> Ahg327171 jgi|Araly1|327171|fgenesh1_pm.C_scaffold_6002391
Length=498
Score = 215 bits (116), Expect = 4e-55
Identities = 206/246 (84%), Gaps = 19/246 (8%)
Strand=Plus/Plus
Query 442 AAGCAAGGAAATGGTTGGATTGGTGATTCAAGAACTTGGGAGGTC-A--ATGGAGCTCTA 498
||| |||| ||||||||| ||| |||||||||||||||| | || | ||||| |||
Sbjct 257 AAGAAAGGGGATGGTTGGACTGGAGATTCAAGAACTTGGGTGCTCGATGTTGGAGTTCTC 316
Query 499 TCAAGCCGTCTCTACTTCTACCAGG------AG----T-ACCCGGGAACCAAACCAGCAA 547
| ||| ||||||||||||||| ||| || | |||||||||||||||||||||
Sbjct 317 TTAAGTCGTCTCTACTTCTACTAGGTAATATAGATTATGACCCGGGAACCAAACCAGCAA 376
Query 548 AGCGAATGTGGACATCGATCAATGTTGTTACAGATATATATGTTAGCAATAGACAAGAAA 607
||||| |||||| ||||||||| |||| |||| ||| |||||||||||||||||||||
Sbjct 377 AGCGAGTGTGGATATCGATCAACGTTG---CAGAAATACATGTTAGCAATAGACAAGAAA 433
Query 608 CTGCT-GAGTGGACAGTGAGTGATTTTGATGTGTTGGTTCAACAAAAAGAAACAAGATCC 666
||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 434 CTG-TAGAGTGGACAGTGAGTGATTTTGATGTGTTGGTTCCACAAAAACAAACAAGATCC 492
Query 667 TCGTGA 672
| ||||
Sbjct 493 TTGTGA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5