BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09970.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327172 jgi|Araly1|327172|fgenesh1_pm.C_scaffold_6002392 876 0.0
> Ahg327172 jgi|Araly1|327172|fgenesh1_pm.C_scaffold_6002392
Length=750
Score = 876 bits (474), Expect = 0.0
Identities = 672/764 (88%), Gaps = 27/764 (4%)
Strand=Plus/Plus
Query 56 ATGGCAAGTTTGCACCTTGGAGGTGCTTCGTTGATCAATGAGGTCGTTTTTGGCTCCTCC 115
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 1 ATGGCAAGTTTGCACCTTGGAGCTGCTTCGTTGATCAATGAGGACGTTTTTGGCTCTTCC 60
Query 116 TTGATTGGTTTCAGAAGTAAACGGTTTA-AACGAGCTTCAGAGAGATGTAGGTTTTGTGT 174
||||| ||||||||||||||||| |||| || ||| |||||||||||| | | || | |
Sbjct 61 TTGATCGGTTTCAGAAGTAAACGTTTTAGAA-GAGTTTCAGAGAGATGGAAGATTCGAGC 119
Query 175 TCAACAAATGTCAGAGAATGAACAGAGAACTAAACACGAACTGGCTCGTTCTGCTAAAAG 234
||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TCAGCAGATGTTAGAGAATGAACAGAGAACTCAACACGAACTGGCTCGTTCTGCTAAAAG 179
Query 235 AAGCGAGTCTTTGAGACGTATTTTAAAGCAATATGGAGTATCTGTAGAAAACCCTGAAGA 294
||| ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 180 AAGTGAGTCCTTGAGACGTATTTTGAAGCAATATGGAGTATCAGTAGAAACCCCTGAAGA 239
Query 295 AAGTAAGACAAGTAGTAGACTTGATGACCTAGATTGTGAAGAGAAGCAC---GATGCTGT 351
|| ||| |||||||||||||||||||||||| ||| ||||||||||||| |||| |||
Sbjct 240 AAATAAAACAAGTAGTAGACTTGATGACCTAAATTTTGAAGAGAAGCACCACGATGATGT 299
Query 352 TACTTCTTCTGTCATAGATGACGACTCTAAGATGAATACAACTGAGGAGTTGCCTGATTT 411
| |||||||||| |||||||||| || |||||||| ||||||||||| | ||||||||
Sbjct 300 TCCTTCTTCTGTTATAGATGACG-CT--AAGATGAACACAACTGAGGAACTACCTGATTT 356
Query 412 ACGCCGGGTAGAGAAATACACTGAGACTGTTGGTACTGCAGATAATCTTTCAGGACAAAA 471
||||| | ||||||||||| |||||||||| | |||||||||||||||||||| || |
Sbjct 357 ACGCCAGCAAGAGAAATACAGTGAGACTGTTAGCACTGCAGATAATCTTTCAGGGCACGA 416
Query 472 TCACCA-AATTCTCCCCCATTTGAACACAGGTGTTTTGTTAACTTCTCTGCTTCCTGTTC 530
|||||| |||| | || ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 417 TCACCACAATT-TGCCACATTTAAACACAGGTGTTTTATTCACTTCTCTGCTTCCTGTTC 475
Query 531 TTGGATTCTGCATCATATGCATAATTGGGACGTTACACACAATAATCTCCAGAAAGAC-A 589
|||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| || |
Sbjct 476 TTGGGTTCTGCATTGTATGCATAATTGGGACGCTACACTCAATAATCTCCAGAAA-ACCA 534
Query 590 TCACAAGGTCATCATCATGGCTCCGAAA------GGTGGAGAACCGCATTAATGGATTGG 643
||||||| |||||| ||||||||| ||| ||||||||||||| || || ||||||
Sbjct 535 TCACAAGATCATCACCATGGCTCCAAAACAACAAGGTGGAGAACCGCGTTGATTGATTGG 594
Query 644 AACGAGCCGCTTGCTTCTGATGGACATGATTCGATGTCTCCAGAATACAGAGTCGCTTCA 703
|||||||||||| ||||||||| |||||||||| | | |||||||||||||||||||||
Sbjct 595 AACGAGCCGCTTACTTCTGATGAACATGATTCG-T--CGCCAGAATACAGAGTCGCTTCA 651
Query 704 ACGAATCAGGAAGCTACCGCTACTGATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 763
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 652 ACGAATCAGGAAGCTA-----AC-GATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 705
Query 764 GAGTACAAGAGATTTCTATTAGAATGTGGGGTGGGTGAATCTTA 807
||||||||||||||| |||| |||||||| || ||||||||||
Sbjct 706 GAGTACAAGAGATTTTTATTGGAATGTGGAGTTAGTGAATCTTA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5