BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09990.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489845 jgi|Araly1|489845|fgenesh2_kg.6__2979__AT4G09990.1 1332 0.0
Ahg913197 jgi|Araly1|913197|Al_scaffold_0001_3451 531 5e-150
> Ahg489845 jgi|Araly1|489845|fgenesh2_kg.6__2979__AT4G09990.1
Length=940
Score = 1332 bits (721), Expect = 0.0
Identities = 871/944 (92%), Gaps = 7/944 (1%)
Strand=Plus/Plus
Query 1 AAGGAAAACATGAGGAATAAATCCCAATCATTCATCAGCTCAAAGCTTATATTCATTTGT 60
||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1 AAGGAAAACATGAGGAACAAACCCCAATCAATCATCAGCGCAAAGCTTATATTCATTTGT 60
Query 61 TGCTCAATCTTGGTGTTGTTCATTCTCTTCTTGAAAAGAGCAAGCTTCTCTTCCAATTCA 120
| |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 61 TTCTCAATCTTGGTCTTGTTCATTCTCTTCTTGAATAGAGCAAGCTTCTCTTCCTCTTCA 120
Query 121 ACCGCAACCATTCGA-GACGAATATCACCAGAAATCGAAGTGCCCATCAACCCCACAACA 179
||| ||||||| ||| | |||||||||| ||| | | || ||||||| |||| ||| |||
Sbjct 121 ACCTCAACCATACGACG-CGAATATCACGAGATACCTAAATGCCCATTAACCTCACTACA 179
Query 180 ATGCACC-AAATTGCCCACT-TCTCTATCCGACGCATTGGTTCACTATGTCACCTCAGAG 237
||||||| ||||| || | | |||||||| |||||||||||||||||||||||| |||||
Sbjct 180 ATGCACCAAAATT-CCTA-TATCTCTATCAGACGCATTGGTTCACTATGTCACCACAGAG 237
Query 238 ATCACACCACAACAAACGTTTGATGAAGTCTCAGTCTCAAAGAGAGTCTTGGACAAGAAG 297
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 238 ATCACACCACAACAAACGTTTGATGAAATTTCAGTCTCAAAGAGAGTCTTGGACAAGAAA 297
Query 298 TCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGATAGCTTGATGTGGGCATCTCTC 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 TCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGACAGCTTGATGTGGGCATCTCTC 357
Query 358 AATCACGGTGGACGCACTTTGTTCCTCGAGGAAGATGAAGCTTGGATTGAGACAGTAACT 417
||||| |||||||||||||||||||||||||||||| || ||||||| |||||||| |||
Sbjct 358 AATCATGGTGGACGCACTTTGTTCCTCGAGGAAGATAAATCTTGGATCGAGACAGTGACT 417
Query 418 AAGAAATTCCCAAACTTGGAATCCTACCACGTCGTATACGACACAAAAGTGAAAGATTCC 477
||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||||
Sbjct 418 AAGAAATTCCCAAACTTAGAATCATACCACGTTGAATACGACACGAAAGTGAAAGATTCC 477
Query 478 AACAAGCTTATGGAGCTAAAGAGAACAGAGGATTGCAAAGCCGTGTCTGATCCTAGAGAT 537
||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 478 AACAAGCTTATTGAGCTAGAGAGAACAGAGGATTGCAAAGCTGTGTCTGATCCGAGAGAT 537
Query 538 TCCAAATGTGCTCTGTCTCTCAAGGGTTTTCCAGCTGACGTGTACGAGACGCAATGGGAT 597
|| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||
Sbjct 538 TCGAAATGTGCTCTGTCTTTGAAGGATTTTCCGGCTGACGTGTACGAGACGCAATGGGAT 597
Query 598 GTGATAATGGTCGATGCTCCCACTGGTTACCACGATGAAGCTCCAGGGAGGATGAGCGCT 657
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 598 GTGATAATGGTCGATGCTCCCACTGGTTACAACGACGAAGCTCCAGGGAGGATGAGTGCT 657
Query 658 ATTTACACTGCGGGTTTATTGGCTCGTAACCGTTATGACGGTGGGGAGACTGATGTTTTC 717
||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 658 ATTTATACGGCGGGTTTATTGGCTCGTAACCGTTATGACGGCGGCGAGACTGATGTTTTC 717
Query 718 GTTCACGATATTAACCGGCCGGTGGAGGACGAGTTCTCGGTGGCGTTCTTGTGTGGAGGG 777
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 718 GTTCACGACATTAACCGGCCTGTGGAGGATGAGTTCTCGGTGGCGTTCTTGTGTCGAGGG 777
Query 778 TACATGAAAGAGCAGCAAGGAAGACTTAGGCATTTCAACATCCCTAGCCACCGGGCTAGC 837
||||| || |||||||| || || ||||||||||||| |||||||||||| |||||||||
Sbjct 778 TACATTAAGGAGCAGCAGGGGAGGCTTAGGCATTTCACCATCCCTAGCCATCGGGCTAGC 837
Query 838 TTCGGTACACCGTTTTGTCCGGCGGATATCAGTCGCCGCTTTTGATATTGTACAATGAGA 897
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 838 CTCGGTACACCGTTTTGTCCGGCGGATATCAGTCGCCGCTTTTGAAATTGTCCAATGAGA 897
Query 898 GAAAAGTGCAAAGAACAATAACAAGAAAACTTGGCAAAGGACTT 941
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAA-GTGCAAAGAACAATAACAAGAAAACTTGGCAAAGGACTT 940
> Ahg913197 jgi|Araly1|913197|Al_scaffold_0001_3451
Length=897
Score = 531 bits (287), Expect = 5e-150
Identities = 572/706 (81%), Gaps = 33/706 (5%)
Strand=Plus/Plus
Query 173 CACAACAATGCACCAAA-TTGCCCAC-TTCTCTATCCGACGCATTGGTTCACTATGTCAC 230
|||||||||||| |||| || |||| |||| ||||||| ||||||||||| || || |
Sbjct 191 CACAACAATGCA-CAAAGATG-CCACTTTCTTTATCCGATGCATTGGTTCATTACGTTA- 247
Query 231 CTCAG--A-GATCACACCACAACAAACGTTTGATGAAGTCTCAGTCTCAAAGAGAGTCTT 287
| ||| | | |||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 248 C-CAGTAACG-TCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGAGTCTT 305
Query 288 GGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGATAGCTTGATGTG 347
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 306 GGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGTCACGACAGCTTAATGTG 365
Query 348 GGCATCTCTCAATCACGGTGGACGCACTTTGTTCCTCGAGGAAGATGAAGCTTGGATTGA 407
||||||||| || || ||||| || || ||||| | || ||||| || || ||||||
Sbjct 366 GGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACGAGGCATGGATTTC 425
Query 408 GACAGTAACTAAGAAATTCCCAAACTTGGAATCCTACCACGTCGTATACGACACAAAAGT 467
|| |||||||||||| ||||||||| ||||||| |||||||| || ||||||||||||||
Sbjct 426 GATAGTAACTAAGAAGTTCCCAAACCTGGAATCTTACCACGTAGTTTACGACACAAAAGT 485
Query 468 GAAAGATTCCA-ACAAGCTTATGGAGCTAAAGA-GAACAGAGGATTGCAAAGCCGTGTCT 525
|||||||| | |||| || ||||| ||| || || | || || || | | | ||||||
Sbjct 486 CAAAGATTC-AGACAAACTAATGGAACTAG-GAAGATCTGAAGAGTGTAGATCTGTGTCT 543
Query 526 GATCCTAGAGATTCCAAATGTGCTCT-GTC-TCTCAAGGGTTTTCCAGCTGACGTGTACG 583
||||| ||| | || ||||||| ||| | | | | || | ||| || || ||| | ||||
Sbjct 544 GATCCAAGAAACTCGAAATGTGATCTTG-CGT-TGAAAGATTTCCCGGCGGACTTTTACG 601
Query 584 AGACGCAATGGGATGTGATAATGGTCGATGCTCCCACTGGTTACCACGATGAAGCTCCAG 643
||||| |||||||| |||| ||||| |||||||| |||||||| || || |||||||| |
Sbjct 602 AGACGAAATGGGATCTGATTATGGTTGATGCTCCAACTGGTTATCATGAAGAAGCTCCGG 661
Query 644 GGAGGATGAGCGCTATTTACACTGCGGGT-TTATTGGCTCGTAACCGTTATGACGGTGGG 702
|||||||||| ||||||||||| ||||| || ||||||||||||||| | || ||||
Sbjct 662 GGAGGATGAGTGCTATTTACACGGCGGGGCTT-TTGGCTCGTAACCGTGAAGATGGTGA- 719
Query 703 GAGACTGATGTTTTCGTTCACGATATTAACCGGCCGGTGGAGGACGAGTTCTCGGTGGCG 762
| ||||||||||| ||||| || ||||||| |||||||| || |||||||||| | |
Sbjct 720 -A-ACTGATGTTTTTGTTCATGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACT 777
Query 763 TTCTTGTGTGGAGGGTACATGAAAGAGCAGCAA-GGAAGACTTAGGCATTTCAAC-ATCC 820
||||||||| ||| || |||| ||||| || || || ||||| ||||| | | || |
Sbjct 778 TTCTTGTGTAAAGGTTATATGAGGGAGCAA-AATGGGAGGCTTAGACATTTTA-CTATTC 835
Query 821 CTAGCCACCGGGCT--AGCTTCGGTAC-ACCGTTTTGTCCGGCGGA 863
|||| || |||||| |||| || || ||| |||||||||| |||
Sbjct 836 CTAGTCATCGGGCTCGAGCT--GG-ACGACCCTTTTGTCCGGTGGA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5