BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10000.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942790 jgi|Araly1|942790|scaffold_603334.1 1570 0.0
> Ahg942790 jgi|Araly1|942790|scaffold_603334.1
Length=1051
Score = 1570 bits (850), Expect = 0.0
Identities = 982/1044 (94%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 86 CAGTTTTTGATAGGAACAATGTC-AATTTCGGTGGTTGATAGCAGTCTCTGCCATCCGAC 144
||||||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||
Sbjct 3 CAGTTTTTGATAGGAGCAATG-CAAATTTCGGTGGTTAATAGCAGTTTCTGCCATCCGAT 61
Query 145 TGCGTCGTTTCCGTCATCCATGGTTCATTC---T--A----ATCGATTCTCGAAGAGAAT 195
|||||||||||||||||||| | ||||||| | | |||||||||| || |||||
Sbjct 62 TGCGTCGTTTCCGTCATCCACGTTTCATTCTTATCGACCTCATCGATTCTCAAATAGAAT 121
Query 196 ATCAGGGAACGGGAATTGGGTTCGCGAAAGGAGAAGACTTTATGTGAAATCGAGTAACTC 255
||||| ||||| | |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 122 TTCAGGAAACGGTAGTTGGGTTCGCGAAAGGAGAAGACTTTCTGTGAAATCTAGTAACTC 181
Query 256 AGAAGGTAAAA-AGGAGGAAGCAGCACAGAAATCGAGCAGTAATAATACATCTAGCTTCT 314
|||| | |||| | | ||| || |||||||||||||||| |||| |||||| |||||||
Sbjct 182 AGAA-GCAAAATCGAATGAATCATCACAGAAATCGAGCAGCAATAGTACATCAAGCTTCT 240
Query 315 TGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTGGAGGTGATCCTTCTCAACAG-CGG 373
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 241 TGTCCTTTCTCTGTCCATTGCTTAAAGTTTTCTCTGGAGGTGATCCTTCTCAAC-GACGG 299
Query 374 AATCATGCTCTCGAGGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGA 433
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 AATCATGCTCTGGAGGTTGCAACTTCTTCATTAGCATCTGTTGCAAGACTTCCATGGGGA 359
Query 434 TCTCGAGTATCAACTGGGAGTATAGATAACCAGGATGTCTCTTCTAATCCGCCTTTGCGA 493
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 360 TCTCGAGTATCAACTGGGAGTATAGATAACCAAGATGTTTCTTCTAATCCGCCTTTGCGA 419
Query 494 TTGCAGCTTTTTGAATTTGAGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACT 553
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 420 TTGCAGCTTTTTGAATTTGAGGCGTGTCCCTTTTGCCGGAGGGTGCGGGAAGCCATGACT 479
Query 554 GAGCTAGACCTTTCAGTAGAAGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAA 613
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GAGCTAGACCTTTCTGTAGAAGTTTATCCTTGTCCTAAAGGATCTTTAAGACACAGAGAA 539
Query 614 CTGGTTAGAAGATCTGGCGGAAAAGAGATGTTTCCATTTCTCGTCGACCCGAATACTGAA 673
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 CTGGTTAGACGATCTGGCGGAAAAGAGATGTTTCCATTCCTCGTCGACCCGAATACTGAA 599
Query 674 ACTTTAATGTATGAGAGTGGTGACATCGTAAAGTACCTATTTAAACAATATGGAAATGGA 733
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 ACTTTAATGTATGAGAGTGGTGACATTGTAAAGTACCTATTTAAACAATATGGAAATGGA 659
Query 734 AGAGGCCCTTCCACAGGACTTCTGGAAAGCACCTTGTTCACTGGATGGATGCCAACTCTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAGGCCCTTCCACAGGACTTCTGGAAAGCACCTTGTTCACTGGATGGATGCCAACTCTT 719
Query 794 CTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAA 853
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 CTCCGAGCAGGTAGAGGAATGTCATTGTGGGACAAGGCTTCAACAGATCTGCCACCTAAA 779
Query 854 ATGCTCGAGCTCTTCTCTTACGAAAACAACCCGTATTCACGGTTGGTGCGTGAAGCACTG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGCTCGAGCTCTTCTCTTACGAAAACAACCCGTATTCACGGTTGGTGCGTGAAGCACTG 839
Query 914 TGTGAGCTGGAGCTTCCCTATGTATTACACAACATTGGAGAAGGGTCCACACGGATGAAA 973
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTGAGCTGGAGCTCCCCTATGTATTACACAACATTGGAGAAGGGTCCACACGGATGAAA 899
Query 974 TCACTTCTAAATGCTTCAGGATCCAATAAGGTTCCATTCTTGGTTGATCCAAACACCGGT 1033
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 TCGCTTCTAAAGGCTTCAGGATCCAATAAGGTTCCATTCTTGGTTGATCCAAACACTGGT 959
Query 1034 GTCCAATTAGGTGATTACGAGAAGATTCTGGCTTACCTCTTCAAGACATATTCTTCAGCA 1093
|||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||
Sbjct 960 GTCCAATTAGGTGATTACCAAAAGATTCTGACTTACCTCTTCAAGACTTATTCTTCAGCA 1019
Query 1094 GCATTTGCATAGTCCATAGAACCT 1117
|||| |||||||||||||||||||
Sbjct 1020 GCATCTGCATAGTCCATAGAACCT 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5