BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10010.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942791 jgi|Araly1|942791|scaffold_603335.1 2143 0.0
> Ahg942791 jgi|Araly1|942791|scaffold_603335.1
Length=1462
Score = 2143 bits (1160), Expect = 0.0
Identities = 1367/1465 (93%), Gaps = 21/1465 (1%)
Strand=Plus/Plus
Query 422 GGGATCTTGAGACCGGTAAAATGGTAGCAATGAAGAAGGTCAGGTTCGTTAATATGGATC 481
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GGGACCTTGAGACTGGTAAAATGGTAGCCATGAAGAAGGTCAGGTTCGTTAATATGGATC 60
Query 482 CGGAAAGCGTGAGATTCATGGCTAGAGAAATCA-ACATCTTGCGGAAACTAGACCATCCA 540
| |||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||
Sbjct 61 CAGAAAGCGTGAGATTCATGGCCAGAGAAAT-ACACATCTTGCGGAAACTTGACCATCCA 119
Query 541 AACGTTATGAAGCTTGAATGTCTTGTGACCTCTAAACTCTCTGGTAGCTTGTACCTTGTG 600
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 120 AACGTTATGAAGCTTGAGTGTCTTGTGACTTCAAAACTCTCTGGTAGCTTGTACCTTGTG 179
Query 601 TTTGAGTACATGGAGCATGATCTTTCCGGTCTCGCTCTTAGACCCGGTGTAAAATTTACT 660
||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||||
Sbjct 180 TTTGAGTACATGGAGCACGACCTTTCGGGCCTCGCTCTTAGACCTGGTGTAAAATTTACT 239
Query 661 GAATCTCAGATCAAATGTTACATGAAACAATTGCTTAGCGGGCTTGAGCACTGCCACAGC 720
||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 240 GAATCACAAATCAAATGTTACATGAAACAACTGCTTAGCGGGCTTGAACACTGCCACAGC 299
Query 721 CGTGGAATCCTCCACCGCGACATTAAGGGTCCAAATCTCTTGGTAAACAATGATGGAGTC 780
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 300 CGTGGAATCCTCCACCGCGACATTAAAGGTTCAAATCTCTTGGTAAACAATGATGGAGTC 359
Query 781 CTCAAGATTGGAGATTTTGGTCTGGCGAATATCTATCATCCAGAACAAGATCAACCTTTG 840
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 360 CTCAAGATTGGAGATTTTGGTCTGGCGAATTTCTATCATCCAGAACAAGATCAACCCTTG 419
Query 841 ACGAGCCGTGTAGTAACCTTGTGGTACAGAGCCCCTGAGCTTCTACTGGGAGCTACAGAA 900
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 420 ACGAGCCGTGTAGTAACCTTGTGGTACAGGGCCCCTGAGCTTCTTCTAGGAGCTACAGAG 479
Query 901 TATGGTCCAGGGATAGATTTGTGGAGTGTTGGTTGCATTCTCACAGAACTGTTTTTAGGG 960
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATGGTCCCGGGATAGATCTGTGGAGTGTTGGTTGCATTCTCACAGAACTGTTTTTAGGG 539
Query 961 AAACCAATCATGCCGGGAAGAACAGAGGTGGAGCAAATGCATAAGATCTTCAAGTTTTGT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AAACCAATCATGCCGGGAAGAACAGAGGTGGAGCAAATGCATAAGATCTTCAAGTTGTGT 599
Query 1021 GGTTCACCAAGTGATGATTACTGGCAAAAGACAAAGCTACCACTTGCAACAAGTTTCAAG 1080
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 600 GGTTCACCAAGTGATGATTACTGGAAAAAGACAAAGCTACCACTTGCCACAAGTTTCAAG 659
Query 1081 CCGCAACAACCTTATAAACGTGTCCTTCTAGAGACTTTCAAGAACTTACCACCTTCTGCT 1140
|| ||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 660 CCACAACAACCTTACAAGCGTGTCCTTTTAGAGACTTTCAAGAACTTACCATCTTCTGCT 719
Query 1141 CTAGCTCTTGTTGACAAACTTCTATCCTTAGAACCAGCGAAGCGTGGCACGGCTTCTTCG 1200
||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 720 CTAGCTCTTGTTGACAAGCTTCTATGCTTAGAACCAGAGAAGCGTGGCACAGCTTCTTCG 779
Query 1201 ACACTAAGTAGCAAGTTCTTCACTATGGAACCACTCCCTTGTAATGTATCAAGTTTGCCA 1260
|| ||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||
Sbjct 780 ACGCTAAGTAGCAAGTTCTTTACAATGGAACCACTCCCATGTGATGTATCAAGTTTGCCA 839
Query 1261 AAGTATCCTCCAAGCAAGGAACTTGATGCAAAGGTCCGTGATGAAGAAGCAAGAAGGAAA 1320
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 840 AAGTATCCTCCAAGCAAGGAACTTGACGCAAAGGTCCGTGATGAAGAAGCAAGAAGAAAA 899
Query 1321 AAGTCTGAAACGGTGAAGGGTCGTGGACCTGAATCTGTGAGACGAGGTTCGAGAGACTTC 1380
||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 AAGGCTGAAACCGTGAAGGGTCGTGGACCTGAATCTGTGAGACGGGGTTCGAGAGACTTC 959
Query 1381 AAGAGTACTGCTACAACACCAGAGTTCGTTGCTTCAGGGCAGTCAAAAGACACAATCACC 1440
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 960 AAAAGTACTGCTATAACACCGGAGTTCGTTGCTTCAGGGCATTCAAAAGACACAATCACC 1019
Query 1441 ACCAAGAGATTCAATCCTCAGGAAGACAGTAGAACAGGCTTGAGAGGCGACA-G--A-GA 1496
|| || || |||||||||||||||||||||||||| || |||||||| || | | | ||
Sbjct 1020 ACAAAAAGGTTCAATCCTCAGGAAGACAGTAGAACCGGTTTGAGAGGAGAGACGGGAAGA 1079
Query 1497 T-C-A--GA-A-A--GGCTTTTCTCATACCAATTCAATGATTCATCCAAGCATAACAGCA 1548
| | || | | ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1080 GGCGACAGAGAGAAAGGCTTTTCTCATACCAATTCAATGATTCATCCAAGCATAGCTGCA 1139
Query 1549 ACATGGAGTAAAAATGAGAGCTGTAGGAACAATGTAGTTGAGCTAAAGGCTACTCGATCA 1608
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACATGGAGTAAAAATGAGAGCTCTAGGAACAATGTAGTTGAGCTAAAGGCTACTCGATCA 1199
Query 1609 AGCAATGTGCCCATGACTGGGAGATACTTGTCTCCTTCACATAAAGAAGATGTAGCCGTA 1668
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 AGCAACGTGCCTATGACTGGGAGATACTTGTCTCCATCACATAAAGAAGATGTAGCCGTA 1259
Query 1669 CAAACCACAACGACATACGTACGCAAGAAGAACAGAATGCATTGTTCGGGACCATTGATG 1728
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1260 GAAACCACAACGACATACGTACGCAAGAAGAACAGAATGCATTGTTCGGGTCCATTGATG 1319
Query 1729 CCTCCTGGTGGAAACATTGAGGACATA-TTGAAAGACCATGAGAGACAAATCCAAGAAGC 1787
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1320 CCTCCCGGTGGAAACATTGAGGACATTCTT-AAAGACCATGAGAGACAAATCCAAGAAGC 1378
Query 1788 TGTAAGGAAATCACGGCTTGAGAAATCTGCTACAAGGAAAAATAACAAAACATGTG-TAA 1846
|||||||||||| |||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 1379 TGTAAGGAAATCGCGGCTTGAAAAATCAGCAACAAGGAAAAATAACAAAACATGTGCTAA 1438
Query 1847 AGT-GAA-AG-AAGACATGGATGAA 1868
|| ||| | ||||||||||||||
Sbjct 1439 -GTAGAAGAATAAGACATGGATGAA 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5