BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10020.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942793 jgi|Araly1|942793|scaffold_603337.1 1738 0.0
> Ahg942793 jgi|Araly1|942793|scaffold_603337.1
Length=1193
Score = 1738 bits (941), Expect = 0.0
Identities = 1080/1148 (94%), Gaps = 6/1148 (1%)
Strand=Plus/Plus
Query 48 TTGTTATTTTCGAAAGTGAAGAGAAAAATGGTGGATCTATTGAACTCGGTGATGAACCTG 107
||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 TTGTTATTTTCGAAA--GAAGAG--AAATGGTGGACCTATTGAACTCGGTGATGAACCTG 56
Query 108 GTGGCGCCTCCAGCGACCATGGTGGTGATGGCCTTTGCATGGCCATTACTGTCTTTCATT 167
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 57 GTGGCGCCTCCTGCCACGATGGTGGTGATGGCCTTCGCATGGCCATTACTGTCTTTCATT 116
Query 168 AGCTTCTCCGAACGGGCTTACAACTCTTATTTCGCCACCGAAAATATGGAAGATAAAGTA 227
|||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 117 AGCTTCTCCGAACGGGTTTACAACTCCTATTTCGCTACCGAAAACATGGAAGATAAAGTT 176
Query 228 GTTGTCATCACCGGAGCTTCATCGGCCATTGGAGAGCAAATAGCATATGAATATGCAAAA 287
|| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 177 GTCGTAATCACCGGAGCTTCCTCAGCCATTGGAGAGCAAATAGCATATGAATATGCAAAG 236
Query 288 AGAGGAGCGAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGTAAT 347
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 AGAGGAGCAAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGCAAT 296
Query 348 AAGGCTAAACAGATTGGAGCCAACCATGTGATCATCATCGCTGCTGATGTCATCAAAGAA 407
||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 297 AAGGCCAAAGAGATTGGAGCCAACCACGTCATCATCATCGCTGCTGATGTCATCAAAGAA 356
Query 408 GATGACTGCCGCCGTTTTATCACCCAAGCCGTCAACTATTACGGCCGCGTGGATCATCTA 467
||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 357 GATGATTGCTGCCGTTTCATCACCCAAGCCGTCAACTACTACGGCCGCGTGGATCACCTA 416
Query 468 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 476
Query 528 TTTCCACATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCGTTG 587
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 477 TTTCCGCATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCATTG 536
Query 588 CCATACCTTCACCAGACGAATGGCCGAATAGTCGTGAATGCATCGGTTGAAAACTGGTTG 647
||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 537 CCATATCTTCATCAGACGAATGGCCGGATAGTCGTGAATGCATCGGTTGAGAACTGGTTG 596
Query 648 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 656
Query 708 ACGCTGCGTTTCGAGCTAAATGGAGACGTTGGTATAACTATCGCGACTCACGGGTGGATT 767
||||| | |||||||||||||||||||| || ||||||||||| ||||| || |||||
Sbjct 657 ACGCTAAGATTCGAGCTAAATGGAGACGTGGGAATAACTATCGCAACTCATGGATGGATC 716
Query 768 GGCAGTGAGATGAGTGGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 827
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGGAGTGAGATGAGTAGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 776
Query 828 GAAGAGAGAGAAGTACCTGCAAATGGTGGACCGCTAGAGGAATTTGCAAAGATGATTGTG 887
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 777 GAAGAAAGAGAAGTACCTGCAAACGGTGGGCCGCTAGAGGAATTTGCAAAGATGATTGTG 836
Query 888 GCAGGAGCTTGTAGGGGAGATGCATATGTGAAGTTTCCAAACTGGTACGATGTCTTTCTC 947
|| ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 837 GCGGGAGCTTGTAGGGGAGACGCGTATGTGAAGTTCCCAAACTGGTACGATGTGTTTCTC 896
Query 948 CTCTATCGAGTCTTCACACCGAATGTACTGAGATGGACATTCAAGTTGTTACTGTCTACT 1007
|||||| |||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 897 CTCTATAGAGTCTTCACGCCGAATGTGCTTAGATGGACATTCAAGTTGTTACTGTCTACC 956
Query 1008 GAGGGTACACGTAGAAGCTCCCTTGTTGGGGTCGGGTCAGGTATGCCTGTGGATGAATCC 1067
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 957 GAGGGTTCACGTAGAAGCTCCCTTGTTGGGGTCGGGTCGGGTATGCCTGTGGATGAATCC 1016
Query 1068 TCTTCACAAATGAAACTTATGCTTGAAGGAGGACCACCTCGAGTT-CCTGCAAGCCCACC 1126
|||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||
Sbjct 1017 TCTTCACAAATGAAACTTATGCTTGAAGGAGGCCCACCTCG-GTTTCCCGCAAGCCCACC 1075
Query 1127 TAGGTATACCGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCAAGCCC 1186
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 TAGGTATACTGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCGAGCCC 1135
Query 1187 ACCTCGGT 1194
||||||||
Sbjct 1136 ACCTCGGT 1143
Score = 113 bits (61), Expect = 3e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1191 CGGTATCCTGCGAGCCCACCTCGGTTTTCACAGTTTAATATCCAAGAGTTGTAATAAAAA 1250
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1119 CGGTATCCTGCGAGCCCACCTCGGTTTGCACAGTTTAATATCCAAGAGTTGTAATAAAAG 1178
Query 1251 CTGGATGGAG 1260
| ||||||||
Sbjct 1179 CCGGATGGAG 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5