BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10030.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489848 jgi|Araly1|489848|fgenesh2_kg.6__2982__AT4G10030.1 1288 0.0
> Ahg489848 jgi|Araly1|489848|fgenesh2_kg.6__2982__AT4G10030.1
Length=1335
Score = 1288 bits (697), Expect = 0.0
Identities = 844/912 (93%), Gaps = 21/912 (2%)
Strand=Plus/Plus
Query 141 GTAATGTCGGCGGTCTCGTGCTCCACGGCGAGTTCTAGCGGAGGATGTGCATTTAGGTTT 200
|||||||||||||| || |||||||||||||| |||||||| ||||||| | ||||||||
Sbjct 1 GTAATGTCGGCGGTATCTTGCTCCACGGCGAGCTCTAGCGGCGGATGTGGAATTAGGTTT 60
Query 201 CGATCAAAG--A-------CAT---C---AATCCATTCTCCTAATTTCATCAGAATTGGG 245
| ||||||| | ||| | || ||||||||||||| |||||||||| |||
Sbjct 61 CAATCAAAGACATTTGCTTCATCAGCAAAAACCCATTCTCCTAATCTCATCAGAATCGGG 120
Query 246 ACAAATTCTCAGAGTGACAGATTCTGTAAT-CATCGTTTGGAATTGGTACATGGAACT-C 303
| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 121 CCTAATTCTCAGAGTGACAGATTCTGT-ATGCATCGTTTGGAATTGGTACATGGAACTCC 179
Query 304 GTAAAGTGAAAGGAGCATCTGTACGTATGGCATTAGTTGAGGAGAGACAATCAACGAGCA 363
| ||||| | |||| ||||| ||||||||||||| ||||| ||||||||||||||||| |
Sbjct 180 G-AAAGTCAGAGGAACATCTATACGTATGGCATTGGTTGATGAGAGACAATCAACGAGTA 238
Query 364 AAGATGTTGCTGAGCCTCCTCGGGTCCTGGCGTATGATCTTGTTCAAGGAGCACTTGTGA 423
||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 239 AAGATTTTGCTGAGCCTCCTCGGATTCTGGCGTATGATCTTGTTCAAGGGGCACTTGTGA 298
Query 424 AATGGAGATGGAAGGATGACAAATCTGTTCCAGATACACCTACTGCTGTTCTCCTACACG 483
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 299 AATGGAGATGGAAGGATGACAAATCTGTTCCAGATACACCTACCGCTGTTCTCTTACACG 358
Query 484 GAATTTTAGGGAGCGGGAAAAACTGGGGCACTTTTGCTCGTAGATTGGCTCATGAATTCC 543
||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 359 GAATTCTAGGGAGCGGGAAAAACTGGGGCACTTTTGCCCGAAGATTGGCTCATGAGTTCC 418
Query 544 CAACGTGGCAGTTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGA 603
|||| ||||||||||| |||||||| || |||||||||||||||||| ||||||||||||
Sbjct 419 CAACTTGGCAGTTTCTCTTGGTAGATCTTCGTTGCCATGGGGATTCAGCATCTCTCAAGA 478
Query 604 AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTTGTTGGTCAGT 663
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 479 AGAGAGGTCCACACTCTGTTGCTACAACAGCTTCTGATGTTCTAAAACTTGTTGGTCAGT 538
Query 664 TGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAGTTGTATTAAGCA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAGTTGTATTAAGCA 598
Query 724 TGGTAGAGCAAGCAGCTAAGCCTCTTCCACGACCAGTCCGAGCTTGGGTATTGGATGCTA 783
|||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 599 TGGTGGAACAAGCAGCTAAGCCTCTTCCAAGACCAGTCCGGGCTTGGGTATTGGATGCTA 658
Query 784 CTCCTGGTAAAGTTCGTGCAGGAGGAGATGGAGAAGATCATCCACGAGAGCTTATATCAT 843
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCCTGGAAAAGTTCGTGCAGGAGGAGATGGAGAAGATCATCCACGAGAGCTTATATCAT 718
Query 844 TTCTACGTAAATTGCCAAAAGTGGTCTTGTCAAAGCGCGAGGTTCTTAAAGCTCTTATAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCTACGTAAATTGCCAAAAGTGGTCTTGTCAAAGCGCGAGGTTCTTAAAGCTCTTATAA 778
Query 904 ATGAAGGGTTTTCCAATGATGTCGCACAGTGGGTCATTACCAATCTCAGACCTACTGGAC 963
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 779 ATGAAGGGTTTTCCAATGATGTCGCGCAGTGGGTCATTACCAATCTCAAACCTACTGGAC 838
Query 964 CATCAGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAG- 1022
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CATCGGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAAA 898
Query 1023 TCTTACGAAGAG 1034
|||| | |||||
Sbjct 899 TCTTCC-AAGAG 909
Score = 545 bits (295), Expect = 3e-154
Identities = 421/475 (89%), Gaps = 36/475 (8%)
Strand=Plus/Plus
Query 1059 AATCTTCCAAGAGGAGTACATGTGAATTTTCTGAAAGCGGAAAGAAGCTTGCACCGTTGG 1118
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AATCTTCCAAGA-G-GTACATGTGAATTTTCTGAAAGCGGAAAGAAGCTTGCACCGTTGG 954
Query 1119 GCCCTAGAAGACCTTCAGCGAATCCACGCCGCTGAAGAGCTAGCCTCTGAAGAAGGCGGT 1178
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GCCCTAAAAGACCTTCAGCGAATCCACGCCGCTGAAGAGCTAGCCTCTGAAGAAGGCGGT 1014
Query 1179 GGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGGGTTCACACGGATAACCCGGAT 1238
|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 GGCGTAGAAATGCATGTCCTGGAAGATGCCGGTCATTGGGTTCACACAGATAACCCGGAT 1074
Query 1239 GGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGAGGTGCTGAACG 1298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 GGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGTGGTGCTGAACG 1134
Query 1299 GTCTTGGTTCGGCTCTTTTTCTGTGTAATACTTGTGGAGAAGTTAGGTCTAAAAACAGTT 1358
||| || | || || | |||||||||| | | || | | ||| |
Sbjct 1135 --CTT--TT----T-TTGTT-T----AATACTTGTG-ACAT-TT-G----A----CAGAT 1169
Query 1359 GACAGATACAATATCATATACATCAACACTGTGTCCGTGTAATGTTCTGTGTGACATAAG 1418
| || ||| | |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1170 G-CA-ATA---T--CATATACATCAACATTGTGTCCGTGTAATGTTTTGTGTGACATAAG 1222
Query 1419 TAATTCAGAAGTAACATCATATGGCTGTATCATCCGGTATTATTCTTGACTCGATGTCCT 1478
||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1223 TAATTAAGAAGTAGCATCATATGGCTGTATCATCCGGCATTATTCTTTACTCGATGTCCT 1282
Query 1479 TTACATTGCTTTTCtttttttGTGGTTCACTTGGTCAGAGAAAGTTCTAAAGCTC 1533
||||||||||||||||||| || |||||||| ||| ||||||||||||||||||
Sbjct 1283 TTACATTGCTTTTCTTTTT--GTCGTTCACTTAGTCGGAGAAAGTTCTAAAGCTC 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5