BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10040.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489849 jgi|Araly1|489849|fgenesh2_kg.6__2983__AT4G10040.1 730 0.0
> Ahg489849 jgi|Araly1|489849|fgenesh2_kg.6__2983__AT4G10040.1
Length=489
Score = 730 bits (395), Expect = 0.0
Identities = 468/501 (93%), Gaps = 14/501 (3%)
Strand=Plus/Plus
Query 36 AGAAACCGTCAAAAAGCCACCGTTGA-TATTTCTTCCTTGTTGCTTCTTCAATGGCGTCG 94
|||||||||||||||||||||||||| ||||||| | | || |||||||||||
Sbjct 1 AGAAACCGTCAAAAAGCCACCGTTGAGAATTTCTT-C------C-TC--CAATGGCGTCG 50
Query 95 TTCGACGAAGCACCTCCCGGAAACCCCAAAGCCGGTGAAAAGATCTTCAGAACCAAGTGC 154
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 51 TTCGATGAAGCACCTCCCGGAAACCCCAAAGCCGGTGAAAAAATCTTCAGAACCAAATGC 110
Query 155 GCTCAGTGTCACACCGTCGAGAAAGGTGCCGGTCACAAACAAGGACCGAATTTGAATGGA 214
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 111 GCTCAGTGTCACACCGTCGAAAAAGGTGCCGGTCACAAACAAGGACCGAATTTGAATGGA 170
Query 215 TTGTTTGGAAGACAATCTGGAACAACTCCAGGATATTCTTACTCTGCTGCTAACAAAAGC 274
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 171 TTGTTTGGAAGACAATCTGGAACAACACCAGGATATTCATACTCTGCTGCTAACAAAAGC 230
Query 275 ATGGCTGTGAATTGGGAGGAGAAGACTCTTTACGATTACTTGTTGAATCCTAAGAAGTAC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 ATGGCTGTGAATTGGGAGGAGAAGACTCTTTACGATTACTTGTTGAATCCTAAGAAGTAC 290
Query 335 ATCCCTGGAACAAAAATGGTGTTTCCTGGACTGAAAAAACCGCAAGATCGTGCCGATCTC 394
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 291 ATCCCTGGAACGAAAATGGTGTTTCCTGGACTGAAAAAGCCGCAAGATCGTGCCGATCTC 350
Query 395 ATCGCTTATTTGAAGGAAGGTACTGCTTA-GACAGGCTCGTCCAGATATATGAAGCTGGC 453
|||||||| ||||||||||||||||| || ||||||| || | ||||| |||||||| |
Sbjct 351 ATCGCTTACTTGAAGGAAGGTACTGCATAAGACAGGCACGGCTGGATATTTGAAGCTG-C 409
Query 454 AtttttttttCTCACAGCTAAATAAAATCAGACCAAAAATATTATGGTCATGAACTGctt 513
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 410 ATTTTTTTTTCTCACAGATAAATAAA-TCAGACCAAAAATATTATGGTCATGAACTGGTT 468
Query 514 tttgtatggtcttttattctt 534
||||||||||||||| |||||
Sbjct 469 TTTGTATGGTCTTTTCTTCTT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5