BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10050.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489850 jgi|Araly1|489850|fgenesh2_kg.6__2984__AT4G10050.1 1714 0.0
> Ahg489850 jgi|Araly1|489850|fgenesh2_kg.6__2984__AT4G10050.1
Length=1262
Score = 1714 bits (928), Expect = 0.0
Identities = 1157/1262 (92%), Gaps = 37/1262 (3%)
Strand=Plus/Plus
Query 7 AAAAGCAAATTGTagaagaagaagaagaagaag-aGTGATACTGAGAAGATCTGTGAGAT 65
||||||||||||||||||||||||||| || | || || ||||||||||||||||| ||
Sbjct 1 AAAAGCAAATTGTAGAAGAAGAAGAAG-AG-TGAAG-GA-ACTGAGAAGATCTGTGAAAT 56
Query 66 TATTAT--ATTCGATTTTGATCAGTTT-------C-TAAAAAGCTTTCAACAATGGATTC 115
|||||| |||||||| || | ||| | |||||| || ||||||||||||||
Sbjct 57 TATTATACATTCGATTCCGA-AAATTTCGCAAACCTTAAAAACCTCTCAACAATGGATTC 115
Query 116 GTCTTCAAATTTGAATCCTCTTCGTGAAGATACCTCAGAGGAACATTTAGAACCCATAGA 175
||||||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 116 TTCTTCAAATTTAAATCCTCTTCGTGAAGATACCTCAGAGGATCA-TT--------TAGA 166
Query 176 AGCTCCGGCGTCTGTCTTCGCCGCTCGTCCTCTTCGTCCTCCTTCTACGAATTCGTCGGA 235
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 167 AGCTCCGGCGTCTGTCTTCGCCTCTCGTCCTCTTCGTCCTCCTTCTACGAGTTCGTCGGA 226
Query 236 GAAGTATTCGCCTGTAGAATGGAAAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 227 GAAGTATTCGCCTGTAGAATGGACAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 286
Query 296 TGGCTCTGATGATGTGTTTCATGTGTATATGGCAGGA-AATGAAGGACCTGTTGTCTTTT 354
| ||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 287 TAGCTCTGACGATGTGTTTCATGTATATATGGCAGGATCA-GAAGGACCTGTTGTCTTTT 345
Query 355 GTCTCCATGGTGGTGGCTACTCTGGGCTCTCGTTTTCTATAGTAGCAAGTAAAATTAAGG 414
|||| |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||
Sbjct 346 GTCTTCATGGTGGTGGCTATTCTGGGCTTTCGTTTTCTATAGTGGCAAGTCAAATTAAGG 405
Query 415 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGGCACGGTAAATCGGTTTCGGAGAACG 474
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 406 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGACACGGTAAATCGGTTTCCGAGAATG 465
Query 475 AATTGGAGTTATCGCTTGAGACAATGAGCAATGATGTT-TTGGCTGTCATTAAGGAATTG 533
||||||| || ||||||||||| ||||||||||||||| || ||||| ||||||||||||
Sbjct 466 AATTGGACTTGTCGCTTGAGACTATGAGCAATGATGTTGTT-GCTGTGATTAAGGAATTG 524
Query 534 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 584
Query 594 GTGCAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GTACAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 644
Query 654 GTTGAGGGTACTGCTATTTCCTCATTGATTCACATGCAGAAAATTCTTTCAAACAGAATG 713
|||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||
Sbjct 645 GTTGAGGGTACTGCTATTGCCTCGCTAATTCACATGCAGAAAATCCTTTCAAACAGAATG 704
Query 714 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGA 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGG 764
Query 774 AACATTGATTCAGCCCGTGTCTCTATCCCCACAACTCTCAAATATGATGATTCAAAGCAT 833
|||||||| || || |||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 765 AACATTGACTCTGCACGTGTCTCAATCCCCCCAACTCTCAAATATTATGATTCAAAGCAG 824
Query 834 TGCTACGTTTACCGAACACGTCTAGAGGAAACAGAGCAATATTGGAAAGGCTGGTACGAT 893
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 825 TGCTACGTTTACCGGACACGTCTTGAAGAAACAGAGCAATATTGGAAAGGCTGGTATGAC 884
Query 894 GGTCTCTCAGAGAAGTTTTTGTCATCCCCAGTTCCGAAACTCTTGCTATTAGCTGGAACT 953
||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||
Sbjct 885 GGTCTCTCAGAGAAGTTCTTGTCATCTCCGGTTCCAAAACTCTTGCTATTAGCTGGTACT 944
Query 954 GATAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTG 1013
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GACAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTT 1004
Query 1014 GTCAAACACACCGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1073
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GTCAAACACACAGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1064
Query 1074 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1124
Query 1134 AAACCTTCACAACAG-A-C-TAAGACTTGAAGCAGCCATCACTGGACAATGCCAAAGTCG 1190
|||||||||||||| | | ||||||||||| |||||||||| |||||||||||||| |
Sbjct 1125 AAACCTTCACAACAACAGCCTAAGACTTGAATCAGCCATCACCGGACAATGCCAAAGCCA 1184
Query 1191 TCGTGTGGCTCTACTCACTT-GTTTCGCTTTGTCCGTTTATGAATAAACAGAATTAACAA 1249
|||||||| ||| || ||| ||||||||| ||| | ||||||||||||| || |||||
Sbjct 1185 TCGTGTGGG-CTAATCCCTTTGTTTCGCTTGGTCAGCTTATGAATAAACA-AA--AACAA 1240
Query 1250 AC 1251
||
Sbjct 1241 AC 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5