BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10050.1 Length=1330 Score E Sequences producing significant alignments: (Bits) Value Ahg489850 jgi|Araly1|489850|fgenesh2_kg.6__2984__AT4G10050.1 1714 0.0 > Ahg489850 jgi|Araly1|489850|fgenesh2_kg.6__2984__AT4G10050.1 Length=1262 Score = 1714 bits (928), Expect = 0.0 Identities = 1157/1262 (92%), Gaps = 37/1262 (3%) Strand=Plus/Plus Query 7 AAAAGCAAATTGTagaagaagaagaagaagaag-aGTGATACTGAGAAGATCTGTGAGAT 65 ||||||||||||||||||||||||||| || | || || ||||||||||||||||| || Sbjct 1 AAAAGCAAATTGTAGAAGAAGAAGAAG-AG-TGAAG-GA-ACTGAGAAGATCTGTGAAAT 56 Query 66 TATTAT--ATTCGATTTTGATCAGTTT-------C-TAAAAAGCTTTCAACAATGGATTC 115 |||||| |||||||| || | ||| | |||||| || |||||||||||||| Sbjct 57 TATTATACATTCGATTCCGA-AAATTTCGCAAACCTTAAAAACCTCTCAACAATGGATTC 115 Query 116 GTCTTCAAATTTGAATCCTCTTCGTGAAGATACCTCAGAGGAACATTTAGAACCCATAGA 175 ||||||||||| ||||||||||||||||||||||||||||| || || |||| Sbjct 116 TTCTTCAAATTTAAATCCTCTTCGTGAAGATACCTCAGAGGATCA-TT--------TAGA 166 Query 176 AGCTCCGGCGTCTGTCTTCGCCGCTCGTCCTCTTCGTCCTCCTTCTACGAATTCGTCGGA 235 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 167 AGCTCCGGCGTCTGTCTTCGCCTCTCGTCCTCTTCGTCCTCCTTCTACGAGTTCGTCGGA 226 Query 236 GAAGTATTCGCCTGTAGAATGGAAAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 295 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 227 GAAGTATTCGCCTGTAGAATGGACAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 286 Query 296 TGGCTCTGATGATGTGTTTCATGTGTATATGGCAGGA-AATGAAGGACCTGTTGTCTTTT 354 | ||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||| Sbjct 287 TAGCTCTGACGATGTGTTTCATGTATATATGGCAGGATCA-GAAGGACCTGTTGTCTTTT 345 Query 355 GTCTCCATGGTGGTGGCTACTCTGGGCTCTCGTTTTCTATAGTAGCAAGTAAAATTAAGG 414 |||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||||| Sbjct 346 GTCTTCATGGTGGTGGCTATTCTGGGCTTTCGTTTTCTATAGTGGCAAGTCAAATTAAGG 405 Query 415 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGGCACGGTAAATCGGTTTCGGAGAACG 474 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 406 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGACACGGTAAATCGGTTTCCGAGAATG 465 Query 475 AATTGGAGTTATCGCTTGAGACAATGAGCAATGATGTT-TTGGCTGTCATTAAGGAATTG 533 ||||||| || ||||||||||| ||||||||||||||| || ||||| |||||||||||| Sbjct 466 AATTGGACTTGTCGCTTGAGACTATGAGCAATGATGTTGTT-GCTGTGATTAAGGAATTG 524 Query 534 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 584 Query 594 GTGCAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 653 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 GTACAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 644 Query 654 GTTGAGGGTACTGCTATTTCCTCATTGATTCACATGCAGAAAATTCTTTCAAACAGAATG 713 |||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||| Sbjct 645 GTTGAGGGTACTGCTATTGCCTCGCTAATTCACATGCAGAAAATCCTTTCAAACAGAATG 704 Query 714 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGA 773 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGG 764 Query 774 AACATTGATTCAGCCCGTGTCTCTATCCCCACAACTCTCAAATATGATGATTCAAAGCAT 833 |||||||| || || |||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 765 AACATTGACTCTGCACGTGTCTCAATCCCCCCAACTCTCAAATATTATGATTCAAAGCAG 824 Query 834 TGCTACGTTTACCGAACACGTCTAGAGGAAACAGAGCAATATTGGAAAGGCTGGTACGAT 893 |||||||||||||| |||||||| || ||||||||||||||||||||||||||||| || Sbjct 825 TGCTACGTTTACCGGACACGTCTTGAAGAAACAGAGCAATATTGGAAAGGCTGGTATGAC 884 Query 894 GGTCTCTCAGAGAAGTTTTTGTCATCCCCAGTTCCGAAACTCTTGCTATTAGCTGGAACT 953 ||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||| Sbjct 885 GGTCTCTCAGAGAAGTTCTTGTCATCTCCGGTTCCAAAACTCTTGCTATTAGCTGGTACT 944 Query 954 GATAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTG 1013 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 GACAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTT 1004 Query 1014 GTCAAACACACCGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1073 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 GTCAAACACACAGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1064 Query 1074 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1124 Query 1134 AAACCTTCACAACAG-A-C-TAAGACTTGAAGCAGCCATCACTGGACAATGCCAAAGTCG 1190 |||||||||||||| | | ||||||||||| |||||||||| |||||||||||||| | Sbjct 1125 AAACCTTCACAACAACAGCCTAAGACTTGAATCAGCCATCACCGGACAATGCCAAAGCCA 1184 Query 1191 TCGTGTGGCTCTACTCACTT-GTTTCGCTTTGTCCGTTTATGAATAAACAGAATTAACAA 1249 |||||||| ||| || ||| ||||||||| ||| | ||||||||||||| || ||||| Sbjct 1185 TCGTGTGGG-CTAATCCCTTTGTTTCGCTTGGTCAGCTTATGAATAAACA-AA--AACAA 1240 Query 1250 AC 1251 || Sbjct 1241 AC 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49750406685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5