BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10060.1
Length=3034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327181 jgi|Araly1|327181|fgenesh1_pm.C_scaffold_6002401 4183 0.0
Ahg473529 jgi|Araly1|473529|fgenesh2_kg.1__3483__AT1G33700.2 957 0.0
> Ahg327181 jgi|Araly1|327181|fgenesh1_pm.C_scaffold_6002401
Length=2766
Score = 4183 bits (2265), Expect = 0.0
Identities = 2604/2770 (94%), Gaps = 13/2770 (0%)
Strand=Plus/Plus
Query 122 ATGGAGAAGAATGGTCACACGGAAAGTGAACTTCAAACTCAAATGGTTGGAAATGAGAGA 181
||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCAGAAGAATGATCACATGGAAAGTGAACTCCAAACTCAAATGGTTGGAAATGAGAGA 60
Query 182 CTACCTCAAGTAACGTGGCAACGGAAGTTGAACAGCAAAGTGAAGAACCCTTCTGAGTTC 241
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCCACAAGTAACGTGGCAAAGGAAGTTGAACAGCAAAGTGAAGAACCCTTCTGAGTTC 120
Query 242 AAGATGAGTATAAGAGATGTTCTTCATCTGTTTCCTCTAGGCTATAGATTGTGGCGTTAC 301
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 AAGATGAGTATAAGAGATGTTCTTCATCTGTTTCCAATAGGCTATAGATTGTGGCGTCAC 180
Query 302 ACTAAAGAAGAGGCaaaaaaaGGAAGATTTTCGATGTACGATATCTTCAAAAAGCGCCAT 361
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 181 ACTAAAGAAGAAGCAAAAAAAGGAAGAGTTTCGATGTACGATATCTTCAAAAAGCGTCAA 240
Query 362 GTAAGAGGCGACCATGGTGTCCCATTAGGTGGAATTGGTGGAGGAAGCATCGGAAGGAGT 421
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GTAACAGGCGACCATGGCGTCCCATTAGGTGGAATTGGCGGAGGAAGCATCGGAAGGAGT 300
Query 422 TACAAAGGTGAATTTCAGCAGTTTAAGCTCTTCCCTAAAATTTGTGAAGAAGCTCCAATC 481
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TACAAAGGTGAATTTCAGCAGTTTAAGCTCTTCCCTAAAGTTTGTGAAGAAGCTCCAATC 360
Query 482 CTCACAAACCAGTTCTCTGTTTTTG-TGTCGAGACCCGGTGGCT-TGAGCTACTCCACTG 539
||||| ||||||||||||||||||| | | |||| ||||||| | ||| ||||| | ||
Sbjct 361 CTCACTAACCAGTTCTCTGTTTTTGTTAT-GAGATCCGGTGG-TGTGAATTACTCAAGTG 418
Query 540 TTCTATGCCCAACAAAGCCAAAATCTGTAAAAGGTAAAACAGAGGATTTAGGAATAGAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTATGCCCAACAAAGCCAAAATCTGTAAAAGGTAAAACAGAGGATTTAGGAATAGAAT 478
Query 600 CATGGGACTGGAACATGGAAGGGGACAAATCTACCTATCATGCTTTGTATCCAAGGTCTT 659
||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 479 CATGGGACTGGAACATGAAAGGGGACAAATCTATGTATCATGCTCTGTATCCGAGGTCTT 538
Query 660 GGACCGTATACAACGAGCCTGACCCTGAACTCAGAATAGTTTCTCGTCAAGTGTCGCCTT 719
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 539 GGACCGTATACAACGAGCCTGACCCTGAACTCAGAATAGTTTCTCGTCAAATTTCGCCTT 598
Query 720 TTATACCTCATAACTACAAGGAAAGCAGTCTTCCGGTATCGGTTTTCGAATTT-ACGATG 778
||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 599 TTATACCACATAATTACAAGGAAAGCAGTCTTCCGGTATCGGTTTTCG-CTTTCACGGTG 657
Query 779 AGTAACCTTGGAAAAGAAGAAGCAACGGTTACTTTGCTCTTTACTTGGGAGAACTCAGTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTAACCTTGGAAAAGAAGAAGCAACGGTTACTTTGCTCTTTACTTGGGAGAACTCAGTG 717
Query 839 GGAGGAGCTTCTGGTTTAACTGGAGAACACTTCAACTCAACAATAATGGAAAGAGATGGA 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GGAGGAGCTTCTGGTTTAACTGGAGAACACTTCAACTCAACAATGATGGAAAGAGATGGA 777
Query 899 GTACATGCAATAGTTTTACATCACAAGACGGGCAATGGACATCCGCCAGTTACTTACGCT 958
||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 778 GTACATGCAATAGCTTTACATCACAAGACGGACAATGGACACCCGCCAGTTACTTACGCC 837
Query 959 ATTGCAGCGCAAGAAACAGAGGATGTTCATGTCTCTGAGTGTCCATGCTTCTTAGTTTCT 1018
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 838 ATTGCAGCGCAAGAAACAGAGGATGTTCATGTCTCTGGGTGTTCATGCTTCTTAGTTTCT 897
Query 1019 GGTCACTCTCCTAAAGAAATCACAGCAAAAGAGATGTGGGATGAGATTAAAAAGAACAAA 1078
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 GGTCATTCTCCTAAAGAAATCACAGCAAGAGAGATGTGGGATGAGATTAAAAAGAACAAA 957
Query 1079 TCATTCGACG-AGTTAAACAGCGAACCAGGCTCACCTTCGAGACCCGGAACATCCATTGG 1137
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 TCATTCGACGGA-TTAAACAGCGAGGCAGGCTCACCTTCGAGACCCGGAACATCCATTGG 1016
Query 1138 AGCAGCCATAGCTGCTAAAGTGAAGGTTCCTCCAGGTTGTGACCGTACTGTCACGTTTTC 1197
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1017 AGCAGCCATAGCTGCTAATGTGAAGGTTCCTCCAGGTTGTGACCGTACTGTCATGTTTTC 1076
Query 1198 ACTCTCATGGGACTGTCCTGAGGTGCGGTTCAATGAAAAGACTTACCACAGACGATACAC 1257
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 ACTCTCATGGGATTGTCCTGAGGTGCGGTTCAATGAAAAGACTTACCACAGAAGATACAC 1136
Query 1258 AAAATTCTATGGCAACTTAGGCGATGCAGCAGTGAAAATGGCCCGCGACGCTCTTCTAAA 1317
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct 1137 AAAATTCTATGGCAACTTAGGCGACGCAGCAGTGAAAATGGCTCGAGATGCTCTTCTGAA 1196
Query 1318 TTACGTTGATTGGGAGTCTCAGATTGAAGCATGGCAAAGCCCTATTCTCTCAGACACTAC 1377
||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 1197 TTATGTTGATTGGGAGTCTCAAATTGAAGCATGGCAAAGCCCTATTCTTTCAGACACTGC 1256
Query 1378 ACTTCCTGACTGGTACCGAGTTACTCTATTCAACGAACTATACTATTTCAACTCCGGAGG 1437
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1257 ACTTCCTGACTGGTACCGAGTTACTCTATTCAATGAATTATACTATTTCAACTCCGGAGG 1316
Query 1438 AACTATCTGGACAGATGGCTTGCCTCCCAAGGAAAGCATAGAAAGAAGCAAGGTTACAAA 1497
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1317 AACTATCTGGACAGATGGCTTGCCTCCCAAGGAACGCATAGAAAGAAGCAAGATTATAAA 1376
Query 1498 TACAGAACAGAACGACATTGTTATAGACCTCTTCCAGAAAATCAATGCGGTTTGTGAGCA 1557
||||||||||||| ||||||||| ||| |||||| |||||||||||| | ||||||| ||
Sbjct 1377 TACAGAACAGAACAACATTGTTACAGAGCTCTTCAAGAAAATCAATGTGATTTGTGATCA 1436
Query 1558 GATTTATTCTCCTCAATCCTCGAACTCGGAAGAGAACATTGGCCAATTCATCTACCTAGA 1617
|||| |||||||||| |||| |||| |||||||| |||| || |||||||||||||| ||
Sbjct 1437 GATTCATTCTCCTCAGTCCTTGAACGCGGAAGAGCACATCGGGCAATTCATCTACCTCGA 1496
Query 1618 AGGAATTGAGTATCTAATGTACAACACTTACGATGTGCACTTCTATTCTTCATTTGCACT 1677
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1497 AGGAATTGAGTATCTAATGTACAACACTTACGACGTTCACTTCTATTCTTCATTTGCACT 1556
Query 1678 TCTCAGTCTCTTTCCTAAGCTCGCACTCAGTATCCAAAGAGACTTTGCAGCAACAGTTCT 1737
|||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1557 TCTCAGTCTCTTCCCTAAGCTCGAACTCAGCATCCAAAGAGACTTTGCAGCAACAGTTCT 1616
Query 1738 GATTCAAGATCCAACCAAGAAAAAGATCATGAGCTCCGGTGAGTGGGTTACAAGAAAACT 1797
| |||||||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||
Sbjct 1617 GTTTCAAGATCCCACCAAGAAACAGATCATGAGTTCCGGTGAGTGGGTTCCTAGAAAACT 1676
Query 1798 TCTTGGATCTGTTCCTCATGATATAGGTCTAAACGATCCGTGGCTAGAACTAAACGAATA 1857
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1677 TCTTGGATCTATTCCTCATGATATAGGTCTAAACGATCCGTGGCTTGAACTAAACGAATA 1736
Query 1858 TAACTTCTTCAACACGGATCGTTGGAAAGACTTGAACGCCAAGTTTGTTCTTCAAGTCTA 1917
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TAACTTCTTTAACACGGATCGTTGGAAAGACTTGAACGCCAAGTTTGTTCTTCAAGTCTA 1796
Query 1918 CAGAGACGTGGTTGCTACTAACGATCAGAGTTTTGCTAAAGCGGTTTGGCCGTCTGTTTA 1977
||||||||||||| | || ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1797 CAGAGACGTGGTTTCAACCGGCGATCAGAGCTTTGCGAAAGCGGTTTGGCCGTCTGTTTA 1856
Query 1978 CACAGCAGTTGCTTACTTAGATCAGTTCGATAAGGACGAGGACGGGATGATCGAAAACGA 2037
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1857 CACAGCAGTTGCTTACTTAGATCAGTTCGATAAGGACGAGGATGGGATGATCGAAAACGA 1916
Query 2038 AGGGTTTCCGGATCAGACATATGATGCTTGGAGTGTTACAGGGGTTAGTGCTTATTGTGG 2097
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AGGGTTTCCGGATCAAACATACGATGCTTGGAGTGTTACAGGGGTTAGTGCTTATTGTGG 1976
Query 2098 CGGTCTTTGGGTCGCTGCTCTACAAGCTGCGTCTGCATTTGCTAGTATTGTTGGGGAAAA 2157
|||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1977 CGGTCTCTGGGTCGCTGCTCTTCAAGCTGCGTCTGCGTTTGCTCGTATTGTTGGGGAAAA 2036
Query 2158 CGCTGTTGCCATTTACTTCAATGCAAAGTACGAAAAGGCGAAGATTGTTTACGAGAAGCT 2217
|| |||||||||||| |||||| ||||||| |||||||||| | ||||||||||||||
Sbjct 2037 CGGTGTTGCCATTTATTTCAATACAAAGTATAAAAAGGCGAAAAGCGTTTACGAGAAGCT 2096
Query 2218 ATGGAATGGTTCTTACTTCAATTATGACGATAGTGGTAGTGGCTCGAGCTCTTCGATTCT 2277
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2097 ATGGAATGGTTCTTACTTCAATTATGACGATAGTGGTAGCGGCTCGAGCTCCTCGATTCT 2156
Query 2278 TGCTGATCAGTTGGCTGGACAATGGTATGC-ACGAGCGTGTGGATTGAAGCCGATAACGA 2336
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2157 TGCTGATCAGTTGGCTGGACAATGGTATGCGA-GAGCGTGTGGATTGAAGCCGATAACGG 2215
Query 2337 AAGAAGAATGGATAAAGAAAGCACTAGAGACGATCTATGAGTTCAATGTGATGAAAGTTA 2396
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 2216 AAGAAGAATGGATAAAGAAAGCACTCGAGACGATCTATGAGTTCAATGTAATGAAAGTGA 2275
Query 2397 AAGGAGGGACACGAGGCGCAGTGAACGGAATGTCAACGGAAGGAAAAGTGGATACAAATT 2456
|||||||||||||||| |||||||||||||||||| |||| ||| ||||||| || || |
Sbjct 2276 AAGGAGGGACACGAGGGGCAGTGAACGGAATGTCACCGGACGGACAAGTGGACACGAACT 2335
Query 2457 CGTTGGTTTCAAAGGAAGTTTGGGCTGGTACTACTTACTCTGTTGCAGCTTGTATGATTC 2516
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2336 CATTGGTTTCAAAGGAGGTTTGGGCTGGGACTACTTACTCTGTTGCAGCTTGTATGATTC 2395
Query 2517 AAGAAGGGCAAAGAGAAAAAGGGTTTCAGACAGCAAGTGGAATCTACGAGGCTATTTGGT 2576
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2396 AAGAAGGGCAAAGAGAAAAAGGGTTTCAGACAGCAAGTGGAATCTACGAGGCTGTTTGGT 2455
Query 2577 CTGATCGTGGTCTCAGTTGCTCGTTTCAGACACCAGAAGCGTGGAACATGAATGATGAAT 2636
| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 2456 CAGATCGTGGTCTCAGTTGCTCATTTCAGACACCAGAAGCCTGGAATATGAATGATGAAT 2515
Query 2637 ACAGATCTCTGTGTTATATGAGACCTCTTGCTATATGGGCTATACAATGGGCATTGACAC 2696
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2516 ACAGGTCTTTGTGTTATATGAGACCTCTTGCTATATGGTCTATACAATGGGCATTGACAC 2575
Query 2697 GAACACAATCTTTTGGAGAAGAGAAGCAAAAGTTAGTGGCAGGAGATGAAGAAGAAGAAA 2756
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||
Sbjct 2576 GAACACAATCTTTTGGAGAAGAGAAGGAAAAGTTAGTGAAAGGAGA--A-GAAGAAGAAA 2632
Query 2757 GTAATTTGTTGTTAAGACAACACAAAGGGTTCAAAGATGTGGCTCGTTTTGTGAAAATAG 2816
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 GTGATTTGTTGCTAAGACAACACAAAGGGTTCAAAGATGTGGCTCGTTTTGTGAAAATAG 2692
Query 2817 TACCAACGAGCAATGTGCATAGAAGCCGTCTCCAACACACGTACGAGACCGTTCTCAAGA 2876
|||||||||| |||| |||||||||||||||||||||||||||||| |||| || || |
Sbjct 2693 TACCAACGAGAAATGAACATAGAAGCCGTCTCCAACACACGTACGAGGCCGTCCTAAATA 2752
Query 2877 CTCTCCGCTT 2886
|||||||||
Sbjct 2753 TTCTCCGCTT 2762
> Ahg473529 jgi|Araly1|473529|fgenesh2_kg.1__3483__AT1G33700.2
Length=3454
Score = 957 bits (518), Expect = 0.0
Identities = 1106/1379 (80%), Gaps = 84/1379 (6%)
Strand=Plus/Plus
Query 156 AAACTCAAATGGTTGGAAATGAGAGACTACCTCAAGTAACGTGGCAACGGAAGTTGAACA 215
|||| |||||||| | |||| | ||| |||| | | | ||| || ||||||||||||
Sbjct 89 AAAC-CAAATGGTCATAGATGATAAACTTCCTCCATTTTCATGGGAAAGGAAGTTGAACA 147
Query 216 G-CAAAGTGAAGAACCCTTCTGAGTTCAAGA-TGAGTATAA-GAGATGTTCTTCATCTGT 272
| | ||| |||| ||||||||||||||| | |||||| || ||||| |||||||||||
Sbjct 148 GTC-AAGCAAAGACCCCTTCTGAGTTCAA-ATTGAGTA-AACGAGATCATCTTCATCTGT 204
Query 273 TTCC-TCTAGGCTATAGATTGTGGCGTTACACTAAAGAAGAGGCaaaaaaaGGAAGATTT 331
|||| | |||| || |||||||||||| | || ||||| || || ||||||||| |
Sbjct 205 TTCCAT-TAGGATACAGATTGTGGCGTCATACCAAAGACGAAGCCGCAAAAGGAAGGGCT 263
Query 332 TCGATGTACGATATCTTCA-AAAAGCGCCATGTAAGAGGCGACCATGGTGTCCCATTAGG 390
||||| | ||||||||||| |||| | |||| ||| ||| || ||||| ||||| || ||
Sbjct 264 TCGATCTTCGATATCTTCAGAAAA-CACCATATAACAGGAGATCATGGAGTCCCTTTGGG 322
Query 391 TGGAATTGGTGGAGGAAGCATCGGAAGGAGTTACAAAGGTGAATTTCAGCAGTTTAAGCT 450
|||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 323 AGGAATTGGTGCAGGAAGCATTGGAAGGAGTTACAAGGGTGAGTTTCAGCAGTTCAAGCT 382
Query 451 CTTCCCTAAAATTTGTGAAGAAGCTCCAATCCTCACAAACCAGTTCTCTGTTTTTGTGTC 510
||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| ||
Sbjct 383 ATTCCCAAAAATTTGTGAGGAAGCTCCAATACTCACAAACCAATTCTCTGCCTTTGTTTC 442
Query 511 GAGACCCGGTGGCT-TGAGCTACTCCACTGTTCTATGCCCAACAAAGCCA-AA---A-T- 563
| || || | | ||| ||||| ||||||||||||||| |||||||| || | |
Sbjct 443 TCGTCCTGG-CGATGTGAATTACTCAACTGTTCTATGCCCATCAAAGCCACAAGTTATTA 501
Query 564 CTGTA-AA---AGG-TA---AAACAGAGG---A--T-----T-TAGGAATAGAATCATGG 604
| | || ||| || | || ||| | | | ||||||| || || |||
Sbjct 502 AAG-ACAATGGAGGTTATTTATGCAAAGGCCAAGTTCCAAATATAGGAATTGAGTCTTGG 560
Query 605 GACTGGAACATGGA-AGGGGACAAATCTACCTATCATGCT-TTGTATCCAAGGTCTTGGA 662
||||||||||| || |||||| ||||||||||| |||||| || ||||| ||||||||||
Sbjct 561 GACTGGAACAT-GACAGGGGAAAAATCTACCTACCATGCTCTT-TATCCGAGGTCTTGGA 618
Query 663 CCG--TAT-ACAACGAGCCTGACCCTGAACTCAGAATAGTTTCTCGTCAAGTGTCGCCTT 719
||| ||| | || ||||||||||||||||||||||||||||||||||| || || |
Sbjct 619 CCGTCTATGATGGTGAACCTGACCCTGAACTCAGAATAGTTTCTCGTCAAGTCTCTCCCT 678
Query 720 TTATACCTCATAACTACAAGGAAAGCAGTCTTCCGGTATCGGTTTTCGAATTT-ACGATG 778
||||||||||||| ||| ||||||||||||||||||| || |||||| || || ||| ||
Sbjct 679 TTATACCTCATAATTACGAGGAAAGCAGTCTTCCGGTTTCAGTTTTC-AACTTCACGGTG 737
Query 779 AGTAAC-CTTGGAAAAGAAGAAGCAACGGTTACTTTGCTCTTTACTTGGGAGAACTCAGT 837
| ||| || ||| |||| |||||| |||||| ||||||||||||||||||| || ||
Sbjct 738 ACTAATACT-GGAGCAGAACAAGCAATTGTTACTCTGCTCTTTACTTGGGAGAATTCTGT 796
Query 838 GGGAGGAGCTTCTGGTTTAACTGGAGAACACTTCAACTCAACAAT-AATGG-AAAGAGAT 895
||||||||| ||||| ||||||||| | ||||| ||||||||||| || || ||| ||||
Sbjct 797 GGGAGGAGCCTCTGGATTAACTGGACAGCACTTTAACTCAACAATGAA-GGCAAA-AGAT 854
Query 896 GGAGTACATGCAATAGTTTTACATCACAAGACGGGCAA-TGGACATCCGCCAGTTA-CTT 953
||||| |||||| ||| ||||| |||||||| | ||| |||||| || ||||||| ||
Sbjct 855 GGAGTTCATGCAGTAGCCTTACAGCACAAGACAG-CAAATGGACACCCACCAGTTAGCT- 912
Query 954 ACGCTATTGCAGCGCAAGAAACAGAGGATGTTCATGTCTC-TGAGTGTCCATGCTTCT-T 1011
| || ||||| || |||||||||||||||||| |||||| | |||||| || || | |
Sbjct 913 ATGCAATTGCGGCAAAAGAAACAGAGGATGTTCGTGTCTCCTC-GTGTCCTTGTTT-TAT 970
Query 1012 AGTTTCTGGTCACT-CTCCTAA-AGAAATCACAGCAAAAGAGATGTGGGATGAGATTAAA 1069
|||||| || |||| ||||||| | ||||||||||| ||| ||||||||||||||||||
Sbjct 971 AGTTTCGGG-CACTACTCCTAACA-AAATCACAGCAGGAGATATGTGGGATGAGATTAAA 1028
Query 1070 AAGAACAAATCATTCGACGAGTTAAACAGCGAAC-CAGGCTCACCTTCGAGACCCGGAAC 1128
||||| |||||||||| |||| | |||| || || |||| ||||| | ||| |||||
Sbjct 1029 AAGAATGCATCATTCGACAAGTTGACCAGC-AATGCATGCTCTCCTTCAAAACCTGGAAC 1087
Query 1129 ATCCATTGGAGCAGCCATAGCTGCTAAAGTGAAGGTTCCTCCAGGTTGTGACCGTACTGT 1188
|||||||||||||||||||| || |||||||| ||||| ||||| |||||||| || ||
Sbjct 1088 TTCCATTGGAGCAGCCATAGCAGCAAAAGTGAAAGTTCCACCAGGCTGTGACCGAACAGT 1147
Query 1189 CACGTTTTCACTCTCATGGGACTGTCCTGAGG-TGCGGTTCAATGAAAAGACTTACCACA 1247
||| ||||| ||||| ||||| ||||| |||| | | ||| |||| ||||||||||| |
Sbjct 1148 CACATTTTCGCTCTCTTGGGATTGTCCCGAGGCTA-GATTCGATGAGAAGACTTACCATA 1206
Query 1248 GACGATACACAAAATTCTATGGCAACTT-AGGCGATGCAGCAGT-GAAAATGGCCCGCGA 1305
|||||||||||| |||||| || || || ||| ||||||| || | || |||| | |||
Sbjct 1207 GACGATACACAAGATTCTACGG-AAGTTTAGGAAATGCAGCGGTAGCAA-TGGCTCACGA 1264
Query 1306 CGCTCTTCTAAA-TTA-CGTTGATTGGGAGTCTCAGATTGAAGCA-TGGCAAAGC-CCTA 1361
||||||| |||| || | | || ||||| |||||||||||| | |||||| || ||||
Sbjct 1265 CGCTCTTTTAAACTTTTC-T-GAATGGGAAACTCAGATTGAAG-AGTGGCAA-GCTCCTA 1320
Query 1362 TTCTCT-CAGACACTACACTTCCTGACTGGTACCGAGTTACTCTATTCAACGAACTATAC 1420
|||| | | ||||| ||||||||||| ||||| ||| | ||||| |||||||||||||||
Sbjct 1321 TTCT-TGCTGACACAACACTTCCTGAGTGGTATCGAATAACTCTCTTCAACGAACTATAC 1379
Query 1421 TATTTCAACTCCGGAGGAACTATCTGGACAGATGGCTTGCCTCCCAAGGAAAGCATAGA 1479
||||||||||| || || || || ||||| ||||| || ||||| ||| ||||| ||||
Sbjct 1380 TATTTCAACTCAGGGGGGACCATGTGGACTGATGGTTTACCTCCAAAGCAAAGCTTAGA 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114575456960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5