BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10080.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489853 jgi|Araly1|489853|fgenesh2_kg.6__2987__AT4G10080.1 1243 0.0
> Ahg489853 jgi|Araly1|489853|fgenesh2_kg.6__2987__AT4G10080.1
Length=1324
Score = 1243 bits (673), Expect = 0.0
Identities = 827/898 (92%), Gaps = 23/898 (3%)
Strand=Plus/Plus
Query 560 GGTGTTGAAGAACCTATTGAGGATTCGAGCAAGTTGTGTTCTGATTTAGGGGGAAATGAA 619
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 439 GGTGTTGAAGAGCCTATTGAGGATTCGAGCAAGTCGTGTTCTGATTTAGGGGGATGTGAA 498
Query 620 TTGGTTTCTCGAGATTCTGGGGTTGTGAATGGTGAAAAAGAAG-TTGTTTCTGATAGTGT 678
||||||||| ||||||||| |||||||||||||||| | | || ||||||||||| |||
Sbjct 499 TTGGTTTCTGGAGATTCTGAGGTTGTGAATGGTGAAGATG-AGATTGTTTCTGATGGTGG 557
Query 679 AGTTGCTTCTAGTGAAGTAATTGAGGGAAGTGGA-GGAGATACTGT-G-GAAGTTGGAGG 735
||||||||||||||||| ||||||||||| |||| ||| ||| | | | |||||| | ||
Sbjct 558 AGTTGCTTCTAGTGAAGCAATTGAGGGAAATGGAGGGA-ATA-T-TAGAGAAGTT-GTGG 613
Query 736 CGTG--AGTTCTGGTGGTGAGGGTAAAAGTAGAGAGACTGTGTGGTGGAAGATGCCATTT 793
| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 C-TGCAAATTCTGGTGATGAGGGTAAAAGTAGAGAGACTGTGTGGTGGAAGATGCCATTT 672
Query 794 GTGCTTCTTAAGTACTCTGTGTTTAGGATTGGTCCGGTTTGGTCTGTCTCTATGGCTGCT 853
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 673 GTGCTTCTTAAGTACTCTGCGTTTAAGATTGGTCCGGTTTGGTCCGTCTCTATGGCTGCA 732
Query 854 GCTGTGATGGGTTTGGTTCTCTTGGGACGTAGATTGTATAATATGAAGAAGAAAGCTCAA 913
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 733 GCTGTGATGGGTTTGGTTCTCTTGGGACGCAGATTGTATAATATGAAGAAAAAAGCTCAA 792
Query 914 AGGTTCCATCTTAAAGTTACGATTGACGATAAGAAGGCGTCGCGGGTGATGAGTCAGGCT 973
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 793 AGGTTCCATCTTAAAGTTACGATTGATGATAAGAAGGCGTCGCGGGTGATGAGTCAGGCA 852
Query 974 GCTCGACTCAATGAAGTGTTCACAGAGGTAAGAAGGGTCCCTGTGATCCGCCCTGCTCTA 1033
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 853 GCTCGACTCAATGAAGTGTTCACAGAGGTAAGAAGGGTCCCTGTGATCCGTCCTGCTCTA 912
Query 1034 CCATCGCCTGGCGCATGGCCGGTTTTGAGCCTTAGATGAGAAGCCGTTTTCTACAATACC 1093
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 913 CCATCTCCTGGCGCCTGGCCGGTTTTGAGCCTTAGATGAGAAGCCGTTT-CTACAATACC 971
Query 1094 TAGACACAGTGGAGAATCAATCATACAATGTCCATCACTTTATGTACCGTAAGAATACAA 1153
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 972 TATACACAGTGGAGAATCAATCGTACAATGTCCATCACTTTATGTACCGTAAGAATACAG 1031
Query 1154 ATACATGTGT-TT-ATGTCGTACCTATGCATAAGTAGTAGTTTACCATCTTATGAAATCG 1211
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATACATGTGTGTTTATGTCGTACCTATGCATAAGTAGTAGTTTACCATCTTATGAAATCG 1091
Query 1212 CGT-ATGTGAGTCGTGTCCCAACCGTGGGATACACTGCAGAGTGATTACCGTAGCGATTT 1270
| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1092 C-TCATGTGAGTCGTGTCCTTGCCGTGGGATACACTGCAGAGTGATTACAGTAGCGATTT 1150
Query 1271 ATGTATGTTCAGAGACTGAAAATCCCAGTTGG-TAAGCCTTTTTCTATGTTTGATCTTAA 1329
|||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||| |||
Sbjct 1151 ATGTATGTCCAGAGACTGAAAATCTCAGTTGGCTA-GCCTTTTTATATGTTTGATCGTAA 1209
Query 1330 GAATTTCATAAGCTATATGTGGGTTTTGTTATGGATTTCATTGGGGTTTCAAGCTTGTAA 1389
|||| ||| ||||||| |||||||||||||||||| |||| ||||||| ||||||| ||
Sbjct 1210 GAATATCAGAAGCTAT--GTGGGTTTTGTTATGGATGTCATCGGGGTTTGAAGCTTGGAA 1267
Query 1390 ACT-ATTATAGAGAGGAGGACATAGTCCAAAGTCGATAAAACCACTACAATGGAAATA 1446
| | | ||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1268 A-TGAACATAGAGACGAGGACATAGTCCGAAGTCGATAAAACCGCTACAATGGAAATA 1324
Score = 255 bits (138), Expect = 5e-67
Identities = 177/194 (91%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 40 CATTAGGGTTTCTGATTATTGCAATCCCAATCTGAAATCTTCGA-A-TTCGATCATCATG 97
||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||
Sbjct 1 CATTAGGGTTTCTGATTATTGCAATTCCAATCTGAAATCTTCGATATTTCGATCGTCATG 60
Query 98 GATGATTGGGAGCTTCTTCATCATGGCTCTGATACAGAATCAACTGATTCAATCACATCG 157
|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 61 GATGATTGGGAGATTCTTCA--GT-GCTCCGATACAGAATCAACTGATTCAATCACATCG 117
Query 158 GAGACGAAATTAGAGAGT-TCAAG-CGTAATCGATGACGGTATGATTCTTTCTGATCATT 215
|||| |||||| ||| || | ||| | |||||||||||||||||||||||||||||||||
Sbjct 118 GAGAAGAAATTGGAGTGTGT-AAGTC-TAATCGATGACGGTATGATTCTTTCTGATCATT 175
Query 216 TCTCTGCTACTGAT 229
||||||||||||||
Sbjct 176 TCTCTGCTACTGAT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5