BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10090.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895135 jgi|Araly1|895135|Al_scaffold_0006_3131 1230 0.0
> Ahg895135 jgi|Araly1|895135|Al_scaffold_0006_3131
Length=789
Score = 1230 bits (666), Expect = 0.0
Identities = 748/789 (95%), Gaps = 0/789 (0%)
Strand=Plus/Plus
Query 88 ATGGATCGTTCTTTGAATCTCCTCGATTTAGCCTTAGGGTTCGATGAGCAGCTAGCTATT 147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGATCGATCTTTGAATCTCCTCGATTTAGCCTTAGGGTTCGATGAGCAGCTAGCTAAT 60
Query 148 CCATCGCCACTAAATGGAAAAGTAATACTAATAGAAGACTGTGTAGAGACGAGTGGTTCC 207
||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 CCATCTCCACTAAATGGGAAAGTAATACTAATCGAAGACTGTGTAGAGACCAGTGGTTCC 120
Query 208 TTTGTACTTCACCAGCTAATGAAACGTGTTCTCTCCTCTAACTCCTCCGACGCACTTATC 267
||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||
Sbjct 121 TTTGTTCTTCACCAGCTGATGAAACGTGTTCTCTCCCCTAATTCCTCTGACGCTCTTATC 180
Query 268 TTTCTCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGGGATGT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGGGATGT 240
Query 328 AATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGACATGCTCATGGTTAAG 387
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 241 AATTTAGCGACCCATAAGACAAATAATCGATTGGTGTTCTTTGACATGCTCATGATCAAG 300
Query 388 TGTTCAGATGGGGATCAAATGGAAGACAATGTGAGTGCAGTTGCGAAACTATTTCGGGAG 447
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTTCAGATAGTGAAGAAATGGAAGACAATGTGAGTGCAGTTGCGAAACTATTTCGGGAG 360
Query 448 ATACAAGAAACCGTTCGAAAGCTACAGAGTGTAACAAGTGGTAACATAACTGTTATGGTG 507
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 ATACAAGAAACTGTTCGAAAGCTACAGAGTGTAACAAGTGGTAACATAACCGTTATGGTG 420
Query 508 GATGACATGTCTCTGCTGGAAATTGCTACTACCGGCAGCAACTCAGATCACGTATTGGAC 567
|||||||||||||| ||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 421 GATGACATGTCTCTCCTGGAAATTGCAACTACCGGCAGCAATTCAGATCATGTCTTAGAC 480
Query 568 TTCTTGCATTATTGCCACACATTAAGTTCTGAAAGCAATTGTTCATTGGTCATCCTCAAT 627
||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 TTCCTCCACTATTGCCATACCTTAAGTTCTGAAAGCAATTGTTCATTGGTCATTCTCAAT 540
Query 628 CATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTT 600
Query 688 GCAGATGTTGTGATAAAGGCAGAGCCTTTAGCCTCTGGTTTAGCAAATGATGTACATGGC 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGATGTTGTGATAAAGGCAGAGCCTTTAGCCTCTGGTTTAGCAAATGATGTACATGGC 660
Query 748 CAATTGACTGTTCTGAACAAAGGGATAAGCAACTCAGGTAGAGGAAGCTCGAGGAACAAG 807
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 661 CAATTGACTGTTCTGAACAAGGGGATAAGCAACTCAGGTCGAGGAACCTCGAGGAACAAG 720
Query 808 TTGCAGAATTTTCAATTCAGGATCAAAGAAAATGGTATCGACTATTTCTATCCTGGTTGC 867
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 721 TTGCAGAATTTTCAGTTCAGGATCAAGGACAATGGTATCGACTATTTCTATCCTGGTTGC 780
Query 868 AGAAGCTGA 876
|||||||||
Sbjct 781 AGAAGCTGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5