BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10100.1

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489855 jgi|Araly1|489855|fgenesh2_kg.6__2989__AT4G10100.1         614    3e-175


> Ahg489855 jgi|Araly1|489855|fgenesh2_kg.6__2989__AT4G10100.1
Length=443

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 412/449 (92%), Gaps = 12/449 (3%)
 Strand=Plus/Plus

Query  11   TATTCACCAGAGAAATGGTCGTCGCTGACTACTAACCAGAGCCATCGGTGGTTGATTTCG  70
            |||| ||||||||||| ||||||||||   |||||| |||||| |||||||||| |||||
Sbjct  1    TATTAACCAGAGAAATAGTCGTCGCTG---ACTAACTAGAGCCGTCGGTGGTTGGTTTCG  57

Query  71   CGATTTCGAGCTCCATTC-CTACTTGTCTCACCTTAATCTCCGGCGATCGAA-TTTCACG  128
            ||||||||||||||| || || | |||||||||| ||||| |||||||| || ||| || 
Sbjct  58   CGATTTCGAGCTCCA-TCTCTTCCTGTCTCACCTAAATCTTCGGCGATC-AACTTTTACT  115

Query  129  GTTCCGGTGGCCATGGACAAAGAAG---TTACAAAGATTGAAAGTGATGACACTTCATCG  185
            | |||||||||||||||||||||||   ||||||||||||||||||||||||||||||| 
Sbjct  116  GCTCCGGTGGCCATGGACAAAGAAGTTATTACAAAGATTGAAAGTGATGACACTTCATCA  175

Query  186  GTGGAGATCAAAGTGTTGTTATTCGCCAGAGCACGAGAGCTCA-CAGGTGTGCCTGATCT  244
            |||||||||||||||||||||||||||||||| |||||||| | |||| |||||||||||
Sbjct  176  GTGGAGATCAAAGTGTTGTTATTCGCCAGAGCTCGAGAGCT-AGCAGGCGTGCCTGATCT  234

Query  245  AACACTGAAGATGCCATCAGGTAGTACAACACAGAAATGCCTGGATGAGTTGGTGCTTAA  304
            |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  235  AACATTGAAGATGCCATCAGGTAGTACAACACAGAAATGTATGGATGAGTTGGTGCTTAA  294

Query  305  GTTTCCAAGCTTGGAAGAGGTACGTAGCTGTGTTGTTCTCGCTTTGAACGAGGAATATAC  364
            ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct  295  GTTTCCAAGCTTGGAAGAGGTACGTAGCTGTGTCGTTCTTGCTTTGAATGAGGAATATAC  354

Query  365  AACCGATTCCGCCATTGTTCAACATAGAGATGAGTTAGCCATCATACCTCCGATAAGCGG  424
            |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  355  AACCGACTCCGCCATTGTTCAACATAGAGATGAGTTAGCCATCATACCTCCAATAAGCGG  414

Query  425  CGGCTAATGCATCGACACTTCTTAAATCC  453
            |||||||||||||| |||| |||||||||
Sbjct  415  CGGCTAATGCATCGGCACTGCTTAAATCC  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21824996908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5