BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10110.1 Length=795 Score E Sequences producing significant alignments: (Bits) Value Ahg489858 jgi|Araly1|489858|fgenesh2_kg.6__2992__AT4G10110.1 800 0.0 > Ahg489858 jgi|Araly1|489858|fgenesh2_kg.6__2992__AT4G10110.1 Length=688 Score = 800 bits (433), Expect = 0.0 Identities = 557/614 (91%), Gaps = 20/614 (3%) Strand=Plus/Plus Query 1 GCTTTTGATTTCTCGATTCATCTTCTTCTCAGCTTTAGGGTTTCGATTGTTCCGATC-AC 59 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1 GCTTTTGATTTCTCAATTCATCTTCTTCTCAGCTTTAGGGTTTCCATTGTTCCGATCAAC 60 Query 60 TATGTCTGGGACTTCCAATTGCACCGTATACATAGGGAACGTTGACGAAAGAGTAAGCGA 119 |||||| || ||||||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 61 AATGTCTACGAATTCCAATTGCACCGTCTACATAGGAAACGTAGACGAGAGAGTAAGCGA 120 Query 120 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 180 Query 180 TGATAAAGAAACTGATAAACCTAAAGGCTTTGC-TTTCGCTGAGTATGAGACTGAAGAAA 238 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 181 TGATAAAGAAACTGATAAACCTAAAGGCTTTGCCTTT-GCTGAGTATGAGACTGAAGAAA 239 Query 239 TCGCCGATTACGCCGTTAAGCTTTTCTCTGGACTTGTTTCTCTCTACAATCG-AACTTTG 297 |||| ||||||||||||||||||||||| || |||||||| ||||| ||||| || | || Sbjct 240 TCGCTGATTACGCCGTTAAGCTTTTCTCCGGTCTTGTTTCGCTCTATAATCGGAA-TCTG 298 Query 298 AAATTCGCTATATCTGGACAGGATAAGTTACAATCAAATTCTGCAAATTCCGGTCATCG- 356 || ||||||||||||||||||||||||||||| | | || ||||||||| | Sbjct 299 AAGTTCGCTATATCTGGACAGGATAAGTTACAGGC-------G-AA-TTCCGGTCAGAGG 349 Query 357 AGCGAGACCTCAGTCTTTGGCTTTCGAGCATTCGGATAGAGCTGCG--T-ATCATCACTT 413 | ||||||| ||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 350 A-CGAGACCGCAGTCTTTGGCTTTCGAGCATTCGGATAGAGGTTATAATCATCATCACTC 408 Query 414 GGAGAGATTTTCGTCGCAATTGATTTCTCCACCTTCACCACTGCCTCTGGATTACACACA 473 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 409 GGAGAGGTTTTCGTCGCAATTGATTTCTCCACCTTCACCATTGCCTCTGGATTACACACA 468 Query 474 AGAACCACCTCCACCAGGAGTATCGAATGGAGCAAGTTTGGAGTATAGTAGAAGAGTTCT 533 ||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 469 AGAGCCACCTCCACCAGGAGTATCAAATGGAGCTAGTTTGGAGTATAGTAGAAGGGTTCT 528 Query 534 TGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGACAA 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 529 GGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGATAA 588 Query 594 -CACTTGCTCTTCT 606 |||||| | |||| Sbjct 589 ACACTTGTTTTTCT 602 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29354646090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5