BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10110.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489858 jgi|Araly1|489858|fgenesh2_kg.6__2992__AT4G10110.1 800 0.0
> Ahg489858 jgi|Araly1|489858|fgenesh2_kg.6__2992__AT4G10110.1
Length=688
Score = 800 bits (433), Expect = 0.0
Identities = 557/614 (91%), Gaps = 20/614 (3%)
Strand=Plus/Plus
Query 1 GCTTTTGATTTCTCGATTCATCTTCTTCTCAGCTTTAGGGTTTCGATTGTTCCGATC-AC 59
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 GCTTTTGATTTCTCAATTCATCTTCTTCTCAGCTTTAGGGTTTCCATTGTTCCGATCAAC 60
Query 60 TATGTCTGGGACTTCCAATTGCACCGTATACATAGGGAACGTTGACGAAAGAGTAAGCGA 119
|||||| || ||||||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 61 AATGTCTACGAATTCCAATTGCACCGTCTACATAGGAAACGTAGACGAGAGAGTAAGCGA 120
Query 120 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 180
Query 180 TGATAAAGAAACTGATAAACCTAAAGGCTTTGC-TTTCGCTGAGTATGAGACTGAAGAAA 238
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 181 TGATAAAGAAACTGATAAACCTAAAGGCTTTGCCTTT-GCTGAGTATGAGACTGAAGAAA 239
Query 239 TCGCCGATTACGCCGTTAAGCTTTTCTCTGGACTTGTTTCTCTCTACAATCG-AACTTTG 297
|||| ||||||||||||||||||||||| || |||||||| ||||| ||||| || | ||
Sbjct 240 TCGCTGATTACGCCGTTAAGCTTTTCTCCGGTCTTGTTTCGCTCTATAATCGGAA-TCTG 298
Query 298 AAATTCGCTATATCTGGACAGGATAAGTTACAATCAAATTCTGCAAATTCCGGTCATCG- 356
|| ||||||||||||||||||||||||||||| | | || ||||||||| |
Sbjct 299 AAGTTCGCTATATCTGGACAGGATAAGTTACAGGC-------G-AA-TTCCGGTCAGAGG 349
Query 357 AGCGAGACCTCAGTCTTTGGCTTTCGAGCATTCGGATAGAGCTGCG--T-ATCATCACTT 413
| ||||||| ||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 350 A-CGAGACCGCAGTCTTTGGCTTTCGAGCATTCGGATAGAGGTTATAATCATCATCACTC 408
Query 414 GGAGAGATTTTCGTCGCAATTGATTTCTCCACCTTCACCACTGCCTCTGGATTACACACA 473
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 GGAGAGGTTTTCGTCGCAATTGATTTCTCCACCTTCACCATTGCCTCTGGATTACACACA 468
Query 474 AGAACCACCTCCACCAGGAGTATCGAATGGAGCAAGTTTGGAGTATAGTAGAAGAGTTCT 533
||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 469 AGAGCCACCTCCACCAGGAGTATCAAATGGAGCTAGTTTGGAGTATAGTAGAAGGGTTCT 528
Query 534 TGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGACAA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 529 GGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGATAA 588
Query 594 -CACTTGCTCTTCT 606
|||||| | ||||
Sbjct 589 ACACTTGTTTTTCT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5