BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10130.1
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327188 jgi|Araly1|327188|fgenesh1_pm.C_scaffold_6002408 806 0.0
> Ahg327188 jgi|Araly1|327188|fgenesh1_pm.C_scaffold_6002408
Length=543
Score = 806 bits (436), Expect = 0.0
Identities = 510/545 (94%), Gaps = 7/545 (1%)
Strand=Plus/Plus
Query 161 ATGCTTGTCGGTGAGAATTGTGTTCACGAGACATACTACGAGATTCTCTCCGTGAAAGAA 220
|||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGCTTTTCGGTGAGAATTGTGTTCACGAGACATACTATGAGATTCTCTCAGTGAAAGAA 60
Query 221 GATGCTAGCTATGAAGAAATCCGAAATAGCTATCGTTCTGCGATTCTCCACTCTCATCCA 280
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 GATGCGAGCTATGAAGAAATCCGCAATAGCTACCGTTCTGCGATTCTCCACTCTCATCCA 120
Query 281 GATAAGC-T--CAACAATACTTCTCGTTC-TAGCTCAGACGACGAGAAGTTTCTGAAGAT 336
||||||| | |||||| | |||||| || || ||||||||| |||||||||||||||||
Sbjct 121 GATAAGCTTAACAACAACAATTCTCG-TCGTACCTCAGACGATGAGAAGTTTCTGAAGAT 179
Query 337 TCAAAAAGCTTGGGAAGTTCTAAGCGATGCAGAGCTACGTGTAGTTTATGATAATGATCT 396
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 TCAAAAAGCTTGGGAAGTTTTAAGTGATGCAGAGCTACGTGTAGTTTACGATAATGATCT 239
Query 397 TAGATCTTCAAGACATGATGGAATCACTGCTGATGAGATTAGTATTGAGGATATGTCAGT 456
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 240 TAGATCTTCAAGACATGATGGACTCACTGCTGATGAGATAAGTATTGAGGATATGTCAGT 299
Query 457 GGAGATTACTGGTGATGTGATTGATCTTTTTTATCAGTGTAGGTGTGGTGATTACTTTTG 516
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAGATTACTGGTGAAGTTATTGATCTTTTTTATCAGTGTAGGTGTGGTGATTACTTTTG 359
Query 517 TGTTGATTCTAGTGAGTTAGGAACAATGGGGTTTGCTTTGTTGAGAGATGGTGATTTTGT 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 TGTTGATTCTAGTGAGTTAGGAACAATGGGGTTTGCTTTGTTGAGAGATGGTGATTGTGT 419
Query 577 TTATGTTAAGAGATTGGGTGCTTTTGTGGCGTCTGTTGTTCTTCCTTGTGGTTCTTGTTC 636
| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 TCATGTTAAGAGATTGGGTACTTTTGTTGCGTCTGTTGTTCTTCCTTGCGGTTCTTGTTC 479
Query 637 TTTGAAAACACGAGTTTGGGTTGATTCTGATATGAAGATTCCTAT-CTAGGATGGTCTAT 695
||||||||||||||||||||||||||| |||||||||||| || | | || ||| ||| |
Sbjct 480 TTTGAAAACACGAGTTTGGGTTGATTCGGATATGAAGATTTCTTTTCAAG-ATGATCTGT 538
Query 696 TGTGA 700
|||||
Sbjct 539 TGTGA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5