BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10140.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942814 jgi|Araly1|942814|scaffold_603358.1 889 0.0
> Ahg942814 jgi|Araly1|942814|scaffold_603358.1
Length=600
Score = 889 bits (481), Expect = 0.0
Identities = 563/602 (94%), Gaps = 8/602 (1%)
Strand=Plus/Plus
Query 60 GTGAAGATTTTGTAGA-ATCGTGATGGGTTTATCAAAAGGTAGATTAAAAGCATGGTTCA 118
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGAAGATTTTATAGATATCTTGATGGGTTTATCAAAAGGTAGATTAAAAGCATGGTTCA 60
Query 119 ATAAGAAAATCACTGATCCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAGAAAATCACTGATCCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGC 120
Query 179 TTGCTTTCTCTGCTGCACTTGGTATTACCTTGGGGATATTTCCGATATGTGGTGTTCCTG 238
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TTGCTTTCTCTGCCGCACTGGGTATTACTTTGGGGATATTTCCGATATGTGGTGTTCCTG 180
Query 239 TGTTACTATGTGGAGTAGCTTTTGCCTTGCTCGGATCAT-CTTGTCATGCTCCGACCGTA 297
|||| |||||||||||||||||||| ||||||||||| | ||||||||||||| || ||
Sbjct 181 TGTTTCTATGTGGAGTAGCTTTTGCGTTGCTCGGATC-TGCTTGTCATGCTCCAACTGTG 239
Query 298 ATGTTGGCTAATATCATTGCCACTCCAGTGGAACTAGCTCTCGTGGTTCCTTTCCTAAGA 357
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 240 ATGTTGGCTAATATCATTGCCACTCCAGTAGAACTAGCTCTCGTCGTGCCTTTCCTAAGA 299
Query 358 CTTGGTGAAAAAGTTACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAG 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTGGTGAAAAAGTCACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAG 359
Query 418 GTTTTCACTGGTCAAGCCTCTCAAGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGG 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTTTCACTGGTCAAGCCTCTCAGGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGG 419
Query 478 TGGCTCGTAGCAACTCCATTTTTCTTTATTACGTTATACGTTGTATTGCTGCCATGTTTC 537
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 420 TGGCTCGTAGCAACTCCATTTTTCTTTATTACGTTATATGTTGTGTTGCTGCCATGTTTC 479
Query 538 ACAATCCTGGTCCGCAAGTTCGGCGGCGTTGCTTCAACCC-AGAAGCTACCTAC-A-A-G 593
| |||||| |||||||| || |||| || | ||| |||| | ||| ||||||| | | |
Sbjct 480 AAAATCCTCGTCCGCAAATTTGGCGCCGGTAATTCGACCCCA-AAGTTACCTACTACAAG 538
Query 594 TATGGAGACGGAGCTCAACCCAAAGCCAAGAGACGCTTAAATTCAACAAGACTTAGAAAC 653
||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 539 TATGGAGACAGAGCTCAACCCAAAGCCTAGAGATGCTTAAATTCAACAACACTTAGAAAC 598
Query 654 CT 655
||
Sbjct 599 CT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5