BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10150.1
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489863 jgi|Araly1|489863|fgenesh2_kg.6__2997__AT4G10150.1 1074 0.0
> Ahg489863 jgi|Araly1|489863|fgenesh2_kg.6__2997__AT4G10150.1
Length=715
Score = 1074 bits (581), Expect = 0.0
Identities = 673/717 (94%), Gaps = 7/717 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTACAGTGACCCAAACCAAAACCCGATTCCAGAAACTTACGCTCCATCAAACTCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTTACAGTGACCCAAACCAAAACCCAATTCCAGAAACTTACGCTCCATCGAACTCA 60
Query 61 ACTGAATCAGAGAAACTGAAACTTTACCAAGCTTTTATCTTCTCTGTTCCAATCTGTTTC 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGAATCCGAGAAACTAAAACTTTACCAAGCTTTTATCTTCTCTGTTCCAATCTGTTTC 120
Query 121 ACATTCATCGTTCTCTTCGTTCTTTACGTCATTTACCTTCGTCGAAACAGCACCACCAAT 180
||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 121 ACATTCATCGTCCTCTTCGTTCTTTACCTCATTTACCTTCGACGAAACAGCACCACCAAC 180
Query 181 GTTGATTGGTCTTCTCTTGGCATGCGTGGTGGTACCTTTGTCCCCACCAACAACAATCTC 240
|| ||||||||||||||||| ||||||||||| | ||| || ||||||||||||||||||
Sbjct 181 GTCGATTGGTCTTCTCTTGGAATGCGTGGTGGCATCTTCGTGCCCACCAACAACAATCTC 240
Query 241 TCAACGGCTGAATTAGGACTGAGCAAAGATATTAGAGAGATGCTTCCTGTTGTCATCTAC 300
|||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 241 TCAACGGCTGAATTAGGACTGAGCAAAGATGTAAGAGAGATGCTTCCCATTGTCATCTAC 300
Query 301 AAGGAGAGTTTCATAGTCAAAGATTCACAATGTTCAGTGTGTCTTGGGGACTACCAAGCA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGAGAGTTTCACAGTCAAAGATTCACAATGTTCAGTGTGTCTTGGGGACTACCAAGCA 360
Query 361 GAAGAGAAACTCCAACAAATGCCATCATGTGGGCACACTTTTCACATGGAATGTATTGAT 420
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 361 GAAGAGAAACTCCAACAAATGCCAGCATGTGGGCACACTTTTCACATGGAGTGTATTGAT 420
Query 421 C-TATGGCTCACATCACACACAACATGCCCTCTTTGTCGTCTCTCTCTTATCCCCAAACC 479
| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 421 CGT-TGGCTCACATCACACACAACTTGCCCTCTTTGTCGTCTCTCTCTTATCCTCAAACC 479
Query 480 GTCCCTAGACCTGTCCCATCAAAGCACAGAGATTGTCTCTTCCATAGAAAACTCTAATGG 539
|||||||||||||||||| |||| | ||||||| |||||| |||||||||||| ||||||
Sbjct 480 GTCCCTAGACCTGTCCCAGCAAACCCCAGAGATAGTCTCTCCCATAGAAAACTTTAATGG 539
Query 540 AGGAGAAGCTTCAACTCAACCAGATTCCCAGTCAGCAACCGAAGCAATAAGTCACACCGA 599
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 540 AGGAGAAGCTTCGGCTCAACCAGATTCCCAGTCAACAACCGAAGCAATAAGTCACATCGA 599
Query 600 TGATGTCGAAGAAGGTAACCGAGATAGTCAAGAGGTCTCTAAGGAGAC-GG---AAGAGA 655
||||| | ||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 600 TGATGGCCAAGAAGGTAACCGAGATAGTCAAGAGGTCTCTAAGGA-ACCGGCCGAAGAGA 658
Query 656 ATGACCGAAACAGCGTAGGGACATCTGATGGTTGTTGTACTTGTAGACTTGGTTAAA 712
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 ATGACCCAAACAGCGTAGGGACATCTGATGGTTGTCGTACTTGTAGACTTGGTTAAA 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5