BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10170.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489864 jgi|Araly1|489864|fgenesh2_kg.6__2998__AT4G10170.1 1546 0.0
Ahg336421 jgi|Araly1|336421|fgenesh1_pg.C_scaffold_1002986 244 9e-64
> Ahg489864 jgi|Araly1|489864|fgenesh2_kg.6__2998__AT4G10170.1
Length=1120
Score = 1546 bits (837), Expect = 0.0
Identities = 993/1064 (93%), Gaps = 28/1064 (3%)
Strand=Plus/Plus
Query 26 AAAAGCTCACACATGACCCAAGAACCCTagagagaagaagaagaggaatgagagaaTTCA 85
|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 1 AAAAGCTCACACATGACCCAAGAACCCT----AG-AGAAG-AG-GGAATGAGAGAATTCA 53
Query 86 TCCTCGATTTTGAAGACATCGCCGAAGGATTTTGTTGGTActttcttcttctctttgact 145
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 54 TCCTCGATTTTGAATACATCGCCGAAGGATTTTGTTGGTACTTTCTTCTTCTCTTTGATT 113
Query 146 ttctctctgactccatcatctcaatttctctcttcttctttgctctaatcacagacttct 205
|||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 114 TTCTCTTTGACTTCTTCATCTCAATTTCTCTCTTCTTCTTTGCTCTAATCACAAACTTCT 173
Query 206 cttctttcctcttctgtctcaatttgatttcttaaaaaaacaaaaaa-a-aaGATGGGTT 263
| ||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||
Sbjct 174 CCTCTTTCCTCTTCTGTCTCAATTTGATTGCTT--AAAAACAAAAAAGACAATATGGGTT 231
Query 264 TAATCAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TAATCAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTT 291
Query 324 ACAACGGTGGAGACCAAACCAACGAGAGTCTTGCTGCTCTGTGTTTAGAAAAGTCTCCTC 383
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 292 ACAACGGTGGAGACCAAACCAACGAGAGTCTTGCTGCTTTGTGTTTAGAAAAGTCTCCTC 351
Query 384 CTTTTCATACTTGGTACTTTGAAACTATTGGTAAAAGAAGATTTGGGTTTTTAATTGGAG 443
||||||| | ||||||||||||||||||||| || || ||||||||||||||| ||||||
Sbjct 352 CTTTTCACAATTGGTACTTTGAAACTATTGGGAAGAGGAGATTTGGGTTTTTATTTGGAG 411
Query 444 ATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGT 471
Query 504 TTCTTGAACATTTGAGAGATGAATTTAAGAAAGCTGCTAGGGAGAATTCTAGAGGAAGTT 563
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 472 TTCTTGAACATTTGAGAGATGAATTCAAGAAAGCTGCTAGGAATAATTCTAGAGGAAGTT 531
Query 564 TTACTGCTATGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTACTAGAC 623
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 532 TTACTGCTTTGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTGCTAGAC 591
Query 624 TTATAGCTTCTCTTGAACGTGTTGCTGA-GAGTAGTAGTAACAATGAATTGAAGAGTAGT 682
|||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 592 TTATAGCTTCCCTTGAACGTGTTGCTGTTGAG-AGTACTAACAATGAATTGAAGAGTA-- 648
Query 683 AATCTTGGTGAACAAAGCGAAGGTTCGAATTCTACTAAAGCTCCGTTGTTGGGGAGGTTA 742
| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 649 A-TCTTGGTGAACAGAGCGAAGTTTCGAATTCGACTAAAGCTCCGTTGTTGGGGAGGTCA 707
Query 743 AGTAAGCAAGAGAAGAAGAAAGGGAAAGATCATGTGATTGAGCTTGAGGAACACAGGAAG 802
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 708 AGTAAGCAAGAGAAGAAGAAAGGGAAAGATCATGTGATTGAGGTTGAAGAACACAGGAAG 767
Query 803 TCTAATGATAGAGG-GAACATAACCGATGATTCAGCGGGAGCTGGA--A----CGTCGTT 855
||||||||||| || ||||| |||||||| |||||||||||| ||| | |||||||
Sbjct 768 TCTAATGATAG-GGAGAACAGAACCGATGCTTCAGCGGGAGCGGGAGCAGGAACGTCGTT 826
Query 856 GGAGAAGGAGTGTGTGTCGAGTAGTGGACGTTCTGTTACTCAAAGCTTTGAATGGAAATG 915
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 827 GGAGAAGGAGTGTGTATCGAGTAGAGGACGTTCTGTTACTCAAAGCTTTGAATGGAAATG 886
Query 916 GCGGCGGTTAGTTCAGATTGTTCTTGCTATTGATGCAGCTATTTGCTTGACACTGTTTGG 975
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 887 GCGGCGGTTAGTTCAGATTGTTCTTGCTATTGATGCAGCTATCTGCTTGACACTCTTTGG 946
Query 976 TATTTGGTTGGCTATATGTCGGGGTATCGAGTGTACACGTTCGTGATTGTGCAGACAGAA 1035
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||
Sbjct 947 TATTTGGTTGGCTATATGTCGAGGTATCGAGTGTACACGTTCGTGATTGTAAA-ACA-AA 1004
Query 1036 AATCGGATAAACA-GAG-TCGATTCTTTACATTCCCTTGTGCAT 1077
| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1005 ACTCGGATATACACGATATCGATTCTTTACATTCCCTTGTGCAT 1048
> Ahg336421 jgi|Araly1|336421|fgenesh1_pg.C_scaffold_1002986
Length=1449
Score = 244 bits (132), Expect = 9e-64
Identities = 586/791 (74%), Gaps = 88/791 (11%)
Strand=Plus/Plus
Query 278 GTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTTACAACGGTG--G-A 334
||||| |||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 700 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTCTGTACTCTTACAACAATGCCGGA 759
Query 335 GACCA----AACCAACGAGAGTCTTGCTGC-TCTGTGTTTAGAAAAGTCTCC-TCCTTTT 388
||||| ||| ||||||||||| || || | | || || |||||| |||| || ||||
Sbjct 760 GACCACCGCAAC-AACGAGAGTCTCGCAGCGT-TATGCTTGGAAAAGACTCCATC-TTTT 816
Query 389 CATACTTGGTACTTTGAAACTATTGGTAAAAGAAGATTTGGGTTTTTAATTGGA-GATGG 447
|| | |||||||| ||||| || | || || | |||||||| || || ||| |||||
Sbjct 817 CACAAGTGGTACTTCGAAACGATAAGCAAGAGGACTTTTGGGTTCTTGAT-GGAAGATGG 875
Query 448 GTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGTTTCT 507
||| ||||||||| ||||||||||||| ||||| ||||||||||| |||||| | |||||
Sbjct 876 GTTCGTTTATTTCACCATTGTTGATGATGTTTTCAAGAGATCTAGCGTTCTTGATTTTCT 935
Query 508 TGA-ACATTTGAGAG-ATGAATTTAAGAAAGCTGCTAGGGAGAATTCTAGAGGAAGTTT- 564
||| | | | || || |||| | ||||||||| || | ||||||| |||||||||||
Sbjct 936 TGAGAAACT-GA-AGGATGAGTCAAAGAAAGCTAATAAGAAGAATTCCAGAGGAAGTTTC 993
Query 565 TACTGCTA-TGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTACTAGAC 623
| ||| | | || ||| || |||||| |||| || |||||| | | ||||
Sbjct 994 T-CTGGGAGT-ATCAGTTTTAGCAATGTTCAAGACCAAATTGTTC--G-----A--AGAC 1042
Query 624 TTATAGCTTCTCTTGA-ACGTGTTGCTGAGAGTAGTAGTAACAATGA--ATTGAAGAGT- 679
| |||||||| || || | || | || | | || | |||| | ||| | |
Sbjct 1043 TCATAGCTTCACTGGAGAA-TGAT-CTCACT-T-GTCTTC-CAAT-ATCATT-ACCT-TC 1094
Query 680 -AGTAATCTTGGTGAACAAAGCGAAGGTTCGAATTCTACTAAAGCTCCG-TTGTTGGGGA 737
| | || || |||||||||||| | | ||||| || ||||||||| || || || |
Sbjct 1095 CATTGATGGTGCTGAACAAAGCGACGCAGCTAATTCCACGAAAGCTCCGCTT-TTAGGCA 1153
Query 738 GGTT-AAGTAAGCAAGAGAAGAAGAAAGGGAA-AGATCATGTG-A-T---TGAG---C-T 786
| | || |||||||||||||||||||| || |||||||||| | | |||| | |
Sbjct 1154 GATCCAAC-AAGCAAGAGAAGAAGAAAGG-AAGAGATCATGTGCACTCACTGAGAGGCAT 1211
Query 787 TGAG---GAACA-CA--GGAAGTCTAATGATAGAGGGAACATAACCGA-TGATTC-AGCG 838
|||| ||| | || |||| || ||||||||||| ||| |||| || || ||| | |
Sbjct 1212 TGAGATTGAAGAACACCGGAAATCGAATGATAGAGGAAACGTAACAGAATG-TTCTAATG 1270
Query 839 GGAGCTGGAACGTCGTTGGAG-AAGG-AGTGTGTGTCGAGTAGTGGACG-TTC--TG-TT 892
|| | | | | | || || | | ||| | || || || ||||| || || ||
Sbjct 1271 C---CTC-ATC-T-GCAGCAGCAACGTA-TGT-T-TCAAGAAGGGGACGATTAGGTGGTT 1321
Query 893 ACTCAAAGCTTTGA-ATGGAAATGGCGGCGGTTA-GTTCAGATTGTTCTTGCTATTGATG 950
|||| ||| |||| | ||||||||||||| | | || |||||||||||||| |||||||
Sbjct 1322 -CTCAGAGCATTGAGA-GGAAATGGCGGCG-TCAAGTGCAGATTGTTCTTGCCATTGATG 1378
Query 951 CAGCTATTTGCTTGACACTGTTTGGTATTTGGTTGGCTATATGTCGGGGTATCGAGTGTA 1010
||||||||||||| || || ||||||||||||||||||| |||| || || |||||||
Sbjct 1379 CAGCTATTTGCTTAACGCTACTTGGTATTTGGTTGGCTATTTGTCATGGCATTGAGTGTA 1438
Query 1011 CACGTTCGTGA 1021
||||||| |||
Sbjct 1439 CACGTTCTTGA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5