BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10190.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg942825 jgi|Araly1|942825|scaffold_603369.1 913 0.0 Ahg930709 jgi|Araly1|930709|scaffold_303166.1 215 6e-55 > Ahg942825 jgi|Araly1|942825|scaffold_603369.1 Length=1108 Score = 913 bits (494), Expect = 0.0 Identities = 719/823 (87%), Gaps = 33/823 (4%) Strand=Plus/Plus Query 299 AAG-TTGATATATGCAACGTCTTTCATTGCGACGGCTTCTTGCTATGCACCACCGTAGAC 357 ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||| Sbjct 262 AAGATTGATATTTGCAAAGTCTTTCATTGCGACGGCTTATTGCTATGCACCACCATAGAC 321 Query 358 AATAGACTCGTTGTTTCGAATCCCTGTTC-TCGTGATACTAAGTGGATCCAACCAAGAAA 416 |||||||| |||||||||||||| ||||| | |||| | ||||||||||||||||||||| Sbjct 322 AATAGACTAGTTGTTTCGAATCCGTGTTCAT-GTGAAATTAAGTGGATCCAACCAAGAAA 380 Query 417 TTTCTACAAGAAATTCGATATATTTGCTCTCGGTAAATCATCATGCAACAAGTACAAAAT 476 || |||||||||||||||||| | |||| |||||||||| |||||||||||||||||||| Sbjct 381 TTCCTACAAGAAATTCGATATCTATGCTTTCGGTAAATCCTCATGCAACAAGTACAAAAT 440 Query 477 CATGAGGATGGATCAATTTTATCCTGA-TAGGCCAGAATTTA--TGAACTACGAAATCTA 533 | ||||||||||||||||| || | | ||| |||| | ||| || ||||||||||||| Sbjct 441 CTTGAGGATGGATCAATTTGATTAT-ACTAGCCCAGTA-TTACTTG-ACTACGAAATCTA 497 Query 534 TGACTTTAACTCTAATTCGTGGAGAGTTGTTGGTAAG---ATTACAGACTGGTTCATACC 590 |||||||||||||||||| ||||||||| |||||||| |||| || ||||||||||| Sbjct 498 TGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATAATTAGGGAATGGTTCATACC 557 Query 591 AAGGTGTATGGACCGTGGCATGTCTGTGAATGGAAACACTTACTGGCTTGCTTCTACTAA 650 |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 558 GCGGTGTACGGACCGCGGCATGTCTGTTAATGGAAACACTTACTGGCTTGCTTCTACTAA 617 Query 651 TAAAGACTTGACCAGTAGT-AGTTTTTTACTTGGTTTTGATTTTTCAACGGAGAGATTTG 709 ||||| || ||| | | |||| ||||||||||||||||||||| ||||| |||| Sbjct 618 C---GACTTCACAAGTGGGCA-TTTTAAACTTGGTTTTGATTTTTCAACAGAGAGTTTTG 673 Query 710 TAAGGGTGTCTCTTCCGGGTGATCATCTCTC-TGATCCTGTTTTTGCTTTAGCAGTTACT 768 |||||| |||||||||||||||||||| || ||||| | ||||||||||| |||||||| Sbjct 674 CAAGGGTATCTCTTCCGGGTGATCATCT-TCCTGATCGTATTTTTGCTTTATCAGTTACT 732 Query 769 AGAGAAGATCCAAAAATATGTGTTGCTA-TC--A---T--T-CAGGAACTCCATATAGAT 819 ||||||||||||||||| ||| | |||| || | | | || ||||||||||||||| Sbjct 733 AGAGAAGATCCAAAAATTTGTATAGCTACTCGGAGCATCATTCAAGAACTCCATATAGAT 792 Query 820 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGCAAGTTCCTATCA 879 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 793 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGAAAATTCCTATCA 852 Query 880 GTTGAATT-AGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAATTTCTTGGT 938 ||| |||| ||||||||||||| ||| | ||||||| | |||| |||||||||||||||| Sbjct 853 GTT-AATTTAGCAAATCTCTACAAGCCTTTTTGCTTTGCTAGTGGGATGAATTTCTTGGT 911 Query 939 CGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCCAATGTTTT 998 ||||||| |||||||||||||||||| ||| | | ||| |||||| |||| | ||||| Sbjct 912 CGACCAGGAGAACAAAGTTTTGGTGTGTCGCG--G-TAAATATTGGGTCTCTGACGTTTT 968 Query 999 CTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTCAGTGTCTAG 1058 ||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | Sbjct 969 CTTACACGTTGTGGGAAAGGATAAATGTATACAAGTGGATCATCATGATGCAGAATCTCG 1028 Query 1059 ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101 |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1029 ATGCTCACTTGTCGACAATTATGTTCCAACTTTGGTTCAAATC 1071 Score = 278 bits (150), Expect = 8e-74 Identities = 216/247 (87%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 1 ATGACGAAGAGAAACATAGTAGATCTTCCCGAGGATTTGGTAATGGAGATACTCGCGAGG 60 |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| | ||| Sbjct 22 ATGAAGAAGAGAAACAGAATAGATCTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGG 81 Query 61 GTTCCGACCGTAA-CTTTGGTCCGATTAC-AATCTACATCCAAAAGATGGAACGTTCTGA 118 |||||| || || ||||||| ||||||| || ||||||||||||||||||||||||||| Sbjct 82 GTTCCG-GCGGAATCTTTGGTACGATTACGAA-CTACATCCAAAAGATGGAACGTTCTGA 139 Query 119 TCGAAGATAAGAGATTTGCTGAGCAGCACTTTACTAATGCACCAAGGCACTCTCTGCTTA 178 || ||||| |||||||||| || | |||| | ||||||||||||||||||||||| ||| Sbjct 140 TCAAAGATGGGAGATTTGCTAAGAAACACTATGCTAATGCACCAAGGCACTCTCTGATTA 199 Query 179 TCATGTTGAT-GACCTTTAGGGTTTATCTCGTGAGCGTCGATCTTCAT-ACAATTCACAA 236 |||||||||| | | |||||||||||||| |||||||||||||| ||| | | || |||| Sbjct 200 TCATGTTGATTG-CTTTTAGGGTTTATCTGGTGAGCGTCGATCTCCATGAGA-TTAACAA 257 Query 237 CAACAAG 243 ||||||| Sbjct 258 CAACAAG 264 > Ahg930709 jgi|Araly1|930709|scaffold_303166.1 Length=1261 Score = 215 bits (116), Expect = 6e-55 Identities = 236/293 (81%), Gaps = 11/293 (4%) Strand=Plus/Plus Query 813 TATAGATGTATGGATTGCAACTACGATTGAGAGT-ACGGGAGCTGCGTCATGGAGCAAGT 871 |||| |||||||||| ||||||| |||||||||| || ||||| ||||||||| ||||| Sbjct 911 TATAAATGTATGGATGGCAACTAAGATTGAGAGTAAC-GGAGCCACGTCATGGATCAAGT 969 Query 872 TCCTATCAGTTGAA-TTAGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAAT 930 | ||||||||| || || || ||| || || ||| | ||||||| ||| | |||||||| Sbjct 970 TTCTATCAGTT-AATTTTGCGAATATCCACAAGCCTTTTTGCTTTCATAATGGGATGAAT 1028 Query 931 TTCTTGGTCGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCC 990 ||||||||||||| | ||||||||||||| ||| | || ||||| || || ||||| Sbjct 1029 TTCTTGGTCGACCCGGAGAACAAAGTTTT--TGTGT-GTCCCGGTAAAAATGGGTTCTCC 1085 Query 991 AATG-TTTTCTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTC 1049 || | ||||| || || ||||||| |||||| ||||||||||| || || ||| | Sbjct 1086 AA-GACCTTCTTAAACATTTTGGGAGAAAATAAATCCATACAAGTGGAACACCAAGATGC 1144 Query 1050 AGTGTCTAG-ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101 || ||| | |||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1145 AGAATCT-GTATGCTCACTTCTCGTCAATTATGTTCCAACTTTGGTTCAAATC 1196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5