BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10190.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942825 jgi|Araly1|942825|scaffold_603369.1 913 0.0
Ahg930709 jgi|Araly1|930709|scaffold_303166.1 215 6e-55
> Ahg942825 jgi|Araly1|942825|scaffold_603369.1
Length=1108
Score = 913 bits (494), Expect = 0.0
Identities = 719/823 (87%), Gaps = 33/823 (4%)
Strand=Plus/Plus
Query 299 AAG-TTGATATATGCAACGTCTTTCATTGCGACGGCTTCTTGCTATGCACCACCGTAGAC 357
||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 262 AAGATTGATATTTGCAAAGTCTTTCATTGCGACGGCTTATTGCTATGCACCACCATAGAC 321
Query 358 AATAGACTCGTTGTTTCGAATCCCTGTTC-TCGTGATACTAAGTGGATCCAACCAAGAAA 416
|||||||| |||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct 322 AATAGACTAGTTGTTTCGAATCCGTGTTCAT-GTGAAATTAAGTGGATCCAACCAAGAAA 380
Query 417 TTTCTACAAGAAATTCGATATATTTGCTCTCGGTAAATCATCATGCAACAAGTACAAAAT 476
|| |||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||
Sbjct 381 TTCCTACAAGAAATTCGATATCTATGCTTTCGGTAAATCCTCATGCAACAAGTACAAAAT 440
Query 477 CATGAGGATGGATCAATTTTATCCTGA-TAGGCCAGAATTTA--TGAACTACGAAATCTA 533
| ||||||||||||||||| || | | ||| |||| | ||| || |||||||||||||
Sbjct 441 CTTGAGGATGGATCAATTTGATTAT-ACTAGCCCAGTA-TTACTTG-ACTACGAAATCTA 497
Query 534 TGACTTTAACTCTAATTCGTGGAGAGTTGTTGGTAAG---ATTACAGACTGGTTCATACC 590
|||||||||||||||||| ||||||||| |||||||| |||| || |||||||||||
Sbjct 498 TGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATAATTAGGGAATGGTTCATACC 557
Query 591 AAGGTGTATGGACCGTGGCATGTCTGTGAATGGAAACACTTACTGGCTTGCTTCTACTAA 650
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 558 GCGGTGTACGGACCGCGGCATGTCTGTTAATGGAAACACTTACTGGCTTGCTTCTACTAA 617
Query 651 TAAAGACTTGACCAGTAGT-AGTTTTTTACTTGGTTTTGATTTTTCAACGGAGAGATTTG 709
||||| || ||| | | |||| ||||||||||||||||||||| ||||| ||||
Sbjct 618 C---GACTTCACAAGTGGGCA-TTTTAAACTTGGTTTTGATTTTTCAACAGAGAGTTTTG 673
Query 710 TAAGGGTGTCTCTTCCGGGTGATCATCTCTC-TGATCCTGTTTTTGCTTTAGCAGTTACT 768
|||||| |||||||||||||||||||| || ||||| | ||||||||||| ||||||||
Sbjct 674 CAAGGGTATCTCTTCCGGGTGATCATCT-TCCTGATCGTATTTTTGCTTTATCAGTTACT 732
Query 769 AGAGAAGATCCAAAAATATGTGTTGCTA-TC--A---T--T-CAGGAACTCCATATAGAT 819
||||||||||||||||| ||| | |||| || | | | || |||||||||||||||
Sbjct 733 AGAGAAGATCCAAAAATTTGTATAGCTACTCGGAGCATCATTCAAGAACTCCATATAGAT 792
Query 820 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGCAAGTTCCTATCA 879
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 793 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGAAAATTCCTATCA 852
Query 880 GTTGAATT-AGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAATTTCTTGGT 938
||| |||| ||||||||||||| ||| | ||||||| | |||| ||||||||||||||||
Sbjct 853 GTT-AATTTAGCAAATCTCTACAAGCCTTTTTGCTTTGCTAGTGGGATGAATTTCTTGGT 911
Query 939 CGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCCAATGTTTT 998
||||||| |||||||||||||||||| ||| | | ||| |||||| |||| | |||||
Sbjct 912 CGACCAGGAGAACAAAGTTTTGGTGTGTCGCG--G-TAAATATTGGGTCTCTGACGTTTT 968
Query 999 CTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTCAGTGTCTAG 1058
||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 969 CTTACACGTTGTGGGAAAGGATAAATGTATACAAGTGGATCATCATGATGCAGAATCTCG 1028
Query 1059 ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101
|||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1029 ATGCTCACTTGTCGACAATTATGTTCCAACTTTGGTTCAAATC 1071
Score = 278 bits (150), Expect = 8e-74
Identities = 216/247 (87%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 1 ATGACGAAGAGAAACATAGTAGATCTTCCCGAGGATTTGGTAATGGAGATACTCGCGAGG 60
|||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| | |||
Sbjct 22 ATGAAGAAGAGAAACAGAATAGATCTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGG 81
Query 61 GTTCCGACCGTAA-CTTTGGTCCGATTAC-AATCTACATCCAAAAGATGGAACGTTCTGA 118
|||||| || || ||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 82 GTTCCG-GCGGAATCTTTGGTACGATTACGAA-CTACATCCAAAAGATGGAACGTTCTGA 139
Query 119 TCGAAGATAAGAGATTTGCTGAGCAGCACTTTACTAATGCACCAAGGCACTCTCTGCTTA 178
|| ||||| |||||||||| || | |||| | ||||||||||||||||||||||| |||
Sbjct 140 TCAAAGATGGGAGATTTGCTAAGAAACACTATGCTAATGCACCAAGGCACTCTCTGATTA 199
Query 179 TCATGTTGAT-GACCTTTAGGGTTTATCTCGTGAGCGTCGATCTTCAT-ACAATTCACAA 236
|||||||||| | | |||||||||||||| |||||||||||||| ||| | | || ||||
Sbjct 200 TCATGTTGATTG-CTTTTAGGGTTTATCTGGTGAGCGTCGATCTCCATGAGA-TTAACAA 257
Query 237 CAACAAG 243
|||||||
Sbjct 258 CAACAAG 264
> Ahg930709 jgi|Araly1|930709|scaffold_303166.1
Length=1261
Score = 215 bits (116), Expect = 6e-55
Identities = 236/293 (81%), Gaps = 11/293 (4%)
Strand=Plus/Plus
Query 813 TATAGATGTATGGATTGCAACTACGATTGAGAGT-ACGGGAGCTGCGTCATGGAGCAAGT 871
|||| |||||||||| ||||||| |||||||||| || ||||| ||||||||| |||||
Sbjct 911 TATAAATGTATGGATGGCAACTAAGATTGAGAGTAAC-GGAGCCACGTCATGGATCAAGT 969
Query 872 TCCTATCAGTTGAA-TTAGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAAT 930
| ||||||||| || || || ||| || || ||| | ||||||| ||| | ||||||||
Sbjct 970 TTCTATCAGTT-AATTTTGCGAATATCCACAAGCCTTTTTGCTTTCATAATGGGATGAAT 1028
Query 931 TTCTTGGTCGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCC 990
||||||||||||| | ||||||||||||| ||| | || ||||| || || |||||
Sbjct 1029 TTCTTGGTCGACCCGGAGAACAAAGTTTT--TGTGT-GTCCCGGTAAAAATGGGTTCTCC 1085
Query 991 AATG-TTTTCTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTC 1049
|| | ||||| || || ||||||| |||||| ||||||||||| || || ||| |
Sbjct 1086 AA-GACCTTCTTAAACATTTTGGGAGAAAATAAATCCATACAAGTGGAACACCAAGATGC 1144
Query 1050 AGTGTCTAG-ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101
|| ||| | |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1145 AGAATCT-GTATGCTCACTTCTCGTCAATTATGTTCCAACTTTGGTTCAAATC 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5