BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10220.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492556 jgi|Araly1|492556|fgenesh2_kg.7__1989__AT4G10220.1 1676 0.0
Ahg895151 jgi|Araly1|895151|Al_scaffold_0006_3147 1515 0.0
> Ahg492556 jgi|Araly1|492556|fgenesh2_kg.7__1989__AT4G10220.1
Length=1206
Score = 1676 bits (907), Expect = 0.0
Identities = 1113/1212 (92%), Gaps = 15/1212 (1%)
Strand=Plus/Plus
Query 1 ATGAAAATGAAATTGGGGTGTGCACTTCCAATGACGTGCATGATTTTGGCATGCTATATT 60
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||| ||||||
Sbjct 1 ATGAAAATGAAATTGGGGTGTGCATTTCGAGTGATGTGCATGATTTTGGCATGTTATATT 60
Query 61 ATTTGTGGGAGCCTTCTAATGAGTCATTGCCATGGTGTTATAAAAGAAGCAAAGACATTA 120
|| ||| | |||||||||||||||||||||||||| ||| || ||||| |||||||||||
Sbjct 61 ATATGTTGTAGCCTTCTAATGAGTCATTGCCATGGCGTTGTAGAAGAAACAAAGACATTA 120
Query 121 AAAAGTAATGAAGATCTTGAAATAGAGCACAAACTTAAGCTTATCAACAAACCTGCATTT 180
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||
Sbjct 121 AAAAGTAAAGAAGATCTTGAAATAGAGCAAAAAATTAAGCTTATCAACAAACCCGCCGTT 180
Query 181 AAAATCGTAAAGACTATTAATGGTGAACGATATGGGTGTGTGGATTTCTACAAACAACCA 240
|||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 AAAATCATAAAGTCTATTAATGGTGAACGGTATGGGTGCGTGGATTTCTACAAACAACCA 240
Query 241 GGACTTGACCACT-CATCCATGAAGAACCACACATTTCACCATAAGATGCGTATGTCATA 299
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 241 GGACTTGACCA-TCCATCCATGAAGAACCACACATTTCACTATAAGATGCGTATGTCACA 299
Query 300 -CTCTGAAGGATCAAAAATGAAAAGA-AAGACACATAGAAACACAACATTTGGCCACTTT 357
||| ||| ||||||||||||||||| || |||||||| |||| ||||||||| |||||
Sbjct 300 CCTC-GAACGATCAAAAATGAAAAGAGAA-ACACATAGTAACAAAACATTTGGTTACTTT 357
Query 358 TGGGAGAATGGCGTAGGTTGTCCCATTGGTACCGTTCCTATACCTCGAGTCACTAAAGAC 417
||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 358 TGGGAGAATGGTGTAGGTTGTCCTATTGGTACCGTTCCTATACTTCGAGTCACTAAAGAT 417
Query 418 GCTCTTTTGAGAATGAAATCCTTCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGAGC 477
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 418 GCTCTTTTGAAAATAAAATCCATCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGGGC 477
Query 478 AAAACCTATAAACCTGCATCTTCTATTGACGATCATCATTTTGCTGTGGTGCGAACTACT 537
|||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 478 AAAACCTACAAACCTACATCTTCTATTGATAATCATCATTTTGCTGTGGTGCGTACTACT 537
Query 538 AAA-GG-AA-CTAGGAGTTACAATGGTGCATCTATGAATATTAATACATTCACTCCTTCA 594
||| || || | | |||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 538 AAAGGGAAACCAAAGAGTTATAATGGTGCGTCTATGAATATTAATACATTCATTCCTTCG 597
Query 595 GTTGGACCTATGCAATTCAGCGCTTCTCGGATGCATTTTCAAATTGGAAATGAATTCATC 654
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 598 GTTGGACCTATGCAATTCAGTGCTAGTCGGATGCATTTTCAAATTGGAAATGAATTCATC 657
Query 655 CAAGTTGGTTGGATCGTACACCCACAATTATACCATGACTTCAACTCTCGGATATTCGTA 714
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 658 CAAGTTGGTTGGATCGTACACCCGCAATTATACCATGACTTCAACTCTCGGCTATTCGTA 717
Query 715 TTTACAAAAT-CGGGAGGAAATGCGTGTTATAATCTCTTCTGTCCTGACGGATCCGGAAT 773
|||||||| | |||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 718 TTTACAAA-TGCGGGAGGACATGAGTGTTATAATCTCTTCTGTCCGGACGGATCCGGAAT 776
Query 774 GATACTAGTTCGTCAAGACTTAACTCCTGGTCTACTTGCCGAGCAAAAAAGTATTGACTT 833
|||||||||| || |||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 777 GATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTGCCGAACAAAAAAGTATTGACTT 836
Query 834 CGCCATAATGAAGGACAAAATCAACGGGAATTGGTGGTTGTTGATGGGTACATCTTGGGA 893
|| ||||||||||| |||||||| || |||||||||||||||||||| || || |||||
Sbjct 837 TGCTATAATGAAGGATAAAATCAATGGAAATTGGTGGTTGTTGATGGGCACCTCCTGGGA 896
Query 894 AGAAGTTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAATG-GTCGAAT 952
|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 897 AGAAATTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA-GAGTAGAAT 955
Query 953 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGGAATAGTCATTATC 1012
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGCAATAGTCATTATC 1015
Query 1013 CGAAGGGGAGCCCCAAAGTAGACTCATATGTCCGTTTAATTACGACTGTGGACGAAAATT 1072
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1016 CGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGATCACGACTGTGGACGAAAATT 1075
Query 1073 ATAATACTGACAAAACAGTGAAAAACACAGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1132
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 ATAATACTGACAAAACTGTGAAAAACACTGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1135
Query 1133 GAGATGCAACGGAGACGTTTTGGAGC-CATGTCGGTCATCTTATTATATATGGAGGCCCT 1191
|||||||||| ||||| |||| | | ||||| |||||||||||||| ||||||||||||
Sbjct 1136 GAGATGCAACAGAGACATTTTTTA-CACATGTAGGTCATCTTATTATTTATGGAGGCCCT 1194
Query 1192 GGGTGTAAATAA 1203
|| |||||||||
Sbjct 1195 GGATGTAAATAA 1206
> Ahg895151 jgi|Araly1|895151|Al_scaffold_0006_3147
Length=1191
Score = 1515 bits (820), Expect = 0.0
Identities = 1050/1161 (90%), Gaps = 15/1161 (1%)
Strand=Plus/Plus
Query 52 TGCTATATTATTTGTGGGAGCCTTCTAATGAGTCATTGCCATGGTGTTATAAAAGAAGCA 111
||||||||||| ||| | ||| ||||| || ||||||||||||| ||| || ||||| ||
Sbjct 37 TGCTATATTATATGTTGTAGCTTTCTATTGGGTCATTGCCATGGCGTTGTAGAAGAACCA 96
Query 112 AAGACATTAAAAAGTAATGAAGATCTTGAAATAGAGCACAAACTTAAGCTTATCAACAAA 171
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 97 AAGATATTAAAAAGTAATAAAGATCTTGAAATAGAGCAAAAACTTAAGCTTATCAACAAA 156
Query 172 CCTGCATTTAAAATCGTAAAGACTATTAATGGTGAACGATATGGGTGTGTGGATTTCTAC 231
||||| |||||||| ||||| ||||||||||||| || ||||| || ||||||||||||
Sbjct 157 CCTGCGGTTAAAATCATAAAGTCTATTAATGGTGAGCGGTATGGCTGCGTGGATTTCTAC 216
Query 232 AAACAACCAGGACTTGACCACTCATCCATGAAGAACCACACATTTCACCATAAGATGCGT 291
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 217 AAACAACCAGGACTTGACCACTCATCCATGAAGAACTACACATTTCACTATAAGATGCGT 276
Query 292 ATGTCATA-CTCTGAAGGATCAAAAATGAAAAGAAAGACACATAGAAACACAACATTTGG 350
|| ||||| ||| | ||| ||||||||||||||| |||||||||| |||| |||||||||
Sbjct 277 ATATCATACCTC-GGAGGGTCAAAAATGAAAAGAGAGACACATAGTAACAAAACATTTGG 335
Query 351 CCACTTTTGGGAGAATGGCGTAGGTTGTCCCATTGGTACCGTTCCTATACCTCGAGTCAC 410
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 336 TCACTTTTGGGAGAATGGCGTAGGCTGTCCTATTGGTACCGTTCCTATACTTCGAGTCAA 395
Query 411 TAAAGACGCTCTTTTGAGAATGAAATCCTTCGATAGCGATAATTCTAATCCGCAAAGTTC 470
|||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 396 TAAAGAGGCTCTTTTGAAAATGAAATCTTTCGATGGCGATAATTCTAATCCGCAAAGTTC 455
Query 471 GTGGAGCAAAACCTATAAACCTGCATCTTCTATTG-ACGATCATCATTTTGCTGTGGTGC 529
|||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||
Sbjct 456 GTGGAGCAAAACCTATAAACCTACATCTTCTATTGAAAG-TCATCATTTTGCTGTGGTGC 514
Query 530 GAACTACTAAA-GG-AA-CTAGGAGTTACAATGGTGCATCTATGAATATTAATACATTCA 586
| ||||||||| || || ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 515 GGACTACTAAAGGGAAACCTAGGAGTTACAATGGTGCGTCTATGAATATTAATGCATTCA 574
Query 587 CTCCTTCAGTTGGACCTATGCAATTCAGCGCTTCTCGGATGCATTTTCAAATTGGAAATG 646
|||||||||||| |||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 575 CTCCTTCAGTTGAACCTATGCAATTTAGCTCTACTCGGATGCATTTTCAAATTGGAAATG 634
Query 647 AATTCATCCAAGTTGGTTGGATCGTACACCCACAATTATACCATGACT-TCAACTCTCGG 705
||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| |||
Sbjct 635 AATTCATCCAAGTTGGTTGGACCGTACACCCGCAATTATACCATGACTCT-AACTCGCGG 693
Query 706 ATATTCGTATTTACAAAATCGGGAGGAAATGCGTGTTATAATCTCTTCTGTCCTGACGGA 765
|||||||||||||||| || |||||| ||| ||||||||||| ||||||||| | |||
Sbjct 694 CTATTCGTATTTACAAATTCAGGAGGACATGAGTGTTATAATCCCTTCTGTCCAAATGGA 753
Query 766 TCCGGAATGATACTAGTTCGTCAAGACTTAACTCCTGGTCTACTTGCCGAGCAAAAAAG- 824
|||||||||||||||||| || |||| || ||||||||||||||| | | | |||||||
Sbjct 754 TCCGGAATGATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTACTGGG-AAAAAAGG 812
Query 825 TATTGACTTCGCCATAATGAAGGACAAAATCAACGGGAATTGGTGGTTGTTGATGGGTAC 884
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 813 TATTGACTTCACCATAATGAAGGACAAAATCAACGGGAATTGGTGGCTGTTGATGGGCAC 872
Query 885 ATC-TTGGGAAGAAGTTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA 943
|| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 873 CTCCTTGG-AAGAAATTGGGTTCTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA 931
Query 944 TGGTCGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGGAATA 1003
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 932 GGGTCGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCGATGGGAAATA 991
Query 1004 GTCATTATCCGAAGGGGAGCCCCAAAGTAGACTCATATGTCCGTTTAATTACGACTGTGG 1063
|||| ||||||| ||||||||||| || |||||||||||||||||| || |||||||| |
Sbjct 992 GTCAGTATCCGACGGGGAGCCCCATAGAAGACTCATATGTCCGTTTGATCACGACTGTAG 1051
Query 1064 ACGAAAATTATAATACTGACAAAACAGTGAAAAACACAGAGAGGTATTCAGACAGTTGTT 1123
|||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1052 ACGAAAATTATAATACCGACCAAATTGTGGAAAACACAGAGAGGTATTCAGACAGTTGTT 1111
Query 1124 ATAAAGTGAGAGATGCAACGGAGACGTTTTGGAGC-CATGTCGGTCATCTTATTATATAT 1182
|| ||||||||||| ||| |||||||||||| || ||||| ||||||||||||| |||
Sbjct 1112 ATGAAGTGAGAGATACAATAGAGACGTTTTGG-GCACATGTAGGTCATCTTATTACCTAT 1170
Query 1183 GGAGGCCCTGGGTGTAAATAA 1203
||||||||| |||||| ||||
Sbjct 1171 GGAGGCCCTAGGTGTATATAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5