BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10240.1

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489868 jgi|Araly1|489868|fgenesh2_kg.6__3002__AT4G10240.1         791    0.0  


> Ahg489868 jgi|Araly1|489868|fgenesh2_kg.6__3002__AT4G10240.1
Length=500

 Score =  791 bits (428),  Expect = 0.0
 Identities = 476/500 (95%), Gaps = 0/500 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGATACAATGTGAAGTGTGTGAAAAGGCTGAAGCAGAAGTACTTTGTTGTTCAGAT  60
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGATACAATGTGAAGTGTGCGAGAAGGCTGAAGCAGAAGTACTTTGTTGTTCAGAT  60

Query  61   GAAGCTGTACTATGCAAGCCATGTGACATTAAGGTTCATGAAGCTAATAAACTTTTCCAA  120
            |||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct  61   GAAGCTGTTCTATGCAAGCCATGTGACATTAAAGTTCATGAAGCTAACAAAATTTTCCAA  120

Query  121  AGACATCACCGAGTCGCCTTACAAAAAGATGCAGCCTCAGCCACCACAGCTTCTGGAGCT  180
            ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct  121  AGACATCACCGAGTCGCCTTACATAAAGATGCATCCTCAGCCACCACAGCCTCTGGAGCT  180

Query  181  CCTCTATGTGATATCTGCCAGGAGAGAAAAGGGTACTTCTTCTGCTTAGAGGATAGAGCA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  CCTCTATGTGATATCTGCCAGGAGAGAAAAGGGTACTTCTTCTGCTTAGAGGACAGAGCA  240

Query  241  ATGCTGTGCAATGATTGTGATGAAGCCATTCACACTTGCAATTCTCACCAAAGATTCTTA  300
             ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct  241  TTGCTGTGTAATGATTGTGATGGAGCCATTCACACATGCAATTCTCACCAAAGATTTTTA  300

Query  301  CTTTCTGGAGTACAAGTTTCTGATCAGTCTTTGACTGAAAACTCCGAATGCAGCACTAGT  360
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  301  CTTTCTGGAGTACAAGTTTCTGATCAGTCTTTAACTGAAAACTCCGAATGTAGCACTAGT  360

Query  361  TTTAGCTCTGAAACTTACCAGATTCAGTCAAAAGTGTCTCTGAATAGTCAGTACTCTAGT  420
            ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct  361  TTTGGCTCTGAAACTTGCCAGATTCAGTCAAAAGTCTCTCTGAATAGTCAGTACTCTAGT  420

Query  421  GAGGAAACTGAAGCTGGAAACTCAGGTGAGATAGTACACAAGAATCCTTCTGTAATCTTA  480
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  421  GAAGAAACTGAAGCTGGAAACTCAGGGGAGATAGTACACAAGAATCCTTCTGTAATCTTA  480

Query  481  AGTCCTTAGAGATATACACA  500
            || ||||||||||| |||||
Sbjct  481  AGACCTTAGAGATACACACA  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18925172144


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5