BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10250.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489869 jgi|Araly1|489869|fgenesh2_kg.6__3003__AT4G10250.1 1013 0.0
> Ahg489869 jgi|Araly1|489869|fgenesh2_kg.6__3003__AT4G10250.1
Length=827
Score = 1013 bits (548), Expect = 0.0
Identities = 601/627 (96%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 155 TTTGGTTTCAACCTTCTACAA-TAAATCCAAATCACTAACCATGATGAAGCACTTGCTAA 213
||||||||||||||||| ||| |||| |||| ||||||||||||||||||| |||||||
Sbjct 106 TTTGGTTTCAACCTTCTTCAAGAAAAT-CAAACCACTAACCATGATGAAGCATTTGCTAA 164
Query 214 GCATCTTCTTCATAGGAGCTTTGTTGCTTGGAAACATCAAAACAAGTGAAGGGTCTTTGT 273
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 165 GCATCTTCTTCATAGGAGCTTTGTTACTTGGAAACATCAAAACAAGTGAAGGATCTTTGT 224
Query 274 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCCGATCTCTGGCTAGACCGGTTCC 333
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 225 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCTGATCTCTGGCTAGACCGGTTCC 284
Query 334 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGGACTCGAGAGGGACACAAGCGTGG 393
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 285 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGAACTCGAGAGGGACACGAGTGTGG 344
Query 394 CTCTGTCTCCAGCAAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 453
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTCTGTCTCCAGCGAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 404
Query 454 ATATCCCCGGTTTGAAGAAGGATGAAGTAaagatagaagtggaggagaacggagttttac 513
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 405 ATATCCCCGGTTTAAAGAAGGATGAAGTAAAGATAGAAGTGGAGGAGAACCGAGTTTTGC 464
Query 514 gagtcagtggagagaggaaaagagaagaagagaagaaaggagatcaatggcatagagtgg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GAGTCAGTGGAGAGAGGAAAAGAGAAGAAGAGAAGAAAGGAGATCAATGGCATAGAGTGG 524
Query 574 agagaTCATATGGAAAATTCTGGAGACAGTTCAAGCTACCTGATAATGTAGATATGGAAT 633
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 525 AGAGATCATATGGAAAGTTCTGGAGACAGTTCAAGCTACCTGATAATGTGGATACGGAAT 584
Query 634 CAGTCAAGGCCAAGCTTGAGAATGGTGTGCTCACTATTAACCTCACGAAACTATCTCCTG 693
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 585 CAGTCAAGGCCAAGCTAGAGAATGGTGTGCTTACTATTAACCTCACAAAACTATCTCCTG 644
Query 694 AAAAAGTTAAGGGTCCAAGAGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 753
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAAAGGTCAAGGGTCCAAGGGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 704
Query 754 TCAGCTCTTCTGAATCCAAAGAACTCT 780
||||||||||||||||||| |||||||
Sbjct 705 TCAGCTCTTCTGAATCCAAGGAACTCT 731
Score = 137 bits (74), Expect = 1e-31
Identities = 100/111 (90%), Gaps = 7/111 (6%)
Strand=Plus/Plus
Query 14 TCTCTGCAAAACTCTACCAAAAGAAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 73
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTGCAAAACTCTAGC---A-AAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 57
Query 74 TGTGTATTATATATACACCAGAGAATTGAGACTAACCATCATAGAAAACAA 124
||||||| ||||| |||||||||||||||||| | | |||||||||||||
Sbjct 58 TGTGTAT-ATATA--CACCAGAGAATTGAGACTTATCTTCATAGAAAACAA 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5