BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10260.1 Length=1084 Score E Sequences producing significant alignments: (Bits) Value Ahg895154 jgi|Araly1|895154|Al_scaffold_0006_3150 1496 0.0 > Ahg895154 jgi|Araly1|895154|Al_scaffold_0006_3150 Length=975 Score = 1496 bits (810), Expect = 0.0 Identities = 922/977 (94%), Gaps = 4/977 (0%) Strand=Plus/Plus Query 1 ATGGCTAATACTCCATTGATAGTTTCCTTTGGTGAAATGCTTATCGACTTTGTCCCTGAC 60 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTAATACTCCATTGATTGTTTCTTTTGGTGAAATGCTTATCGACTTTGTCCCTGAC 60 Query 61 ACTTCTGGTGTTTCTTTAGCTGAGTCCACCGGTTTTCTCAAAGCCCCTGGTGGTGCTCCT 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTTCTGGTGTATCTTTAGCTGAGTCCACCGGTTTTCTCAAAGCCCCTGGTGGTGCTCCG 120 Query 121 GCTAATGTTGCTTGTGCCATCACCAAACTCGGTGGCAAATCAGCTTTCATCGGCAAGTTT 180 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 121 GCTAATGTTGCTTGTGCCATTACCAAACTCGGTGGCAAATCCGCTTTCATCGGCAAGTTT 180 Query 181 GGTGATGATGAGTTTGGACACATGTTGGTTAACATATTGAAGAAGAACGGTGTGAACAGT 240 |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| Sbjct 181 GGTGATGATGAGTTTGGACACATGCTGGTGAACATATTGAAGAAGAATGGTGTGAACAGC 240 Query 241 GAAGGTGTTTGCTTT-GATACCAATGCAAGAACCGCGTTGGCCTTTGTGACTTTGAAGAA 299 ||||||||||| ||| |||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 241 GAAGGTGTTTG-TTTCGATACCAACGCAAGAACCGCGTTGGCTTTTGTGACGTTGAAGAA 299 Query 300 AGATGGTGAGAGAGAGTTTATGTTTTACAGGAACCCTAGTGCGGACATGC-TCTTGAAAG 358 ||||||||||||||||||||||||||||||||| || ||||| || |||| || |||||| Sbjct 300 AGATGGTGAGAGAGAGTTTATGTTTTACAGGAATCCGAGTGCTGATATGCTTC-TGAAAG 358 Query 359 AATCTGAACTCAACAAGGATCTTATCAAGAAAGCTAAGATTTTCCACTATGGTTCCATTA 418 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 359 AATCTGAGCTCAACAAGGATCTTATCAAGAAAGCTAAGATTTTCCATTATGGTTCCATTA 418 Query 419 GCTTGATCTCTGAGCCATGTAGAACAGCTCACATGGCTGCGATGAAAACCGCTAAAGATG 478 |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 419 GCTTGATCTCTGAGCCGTGTAGAGCGGCTCACATGGCTGCGATGAAAACCGCTAAAGATG 478 Query 479 CGGGAGTCTTACTCTCTTATGACCCGAACGTTCGGTTGCCTCTTTGGCCTTCTACTGAAG 538 | ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||| Sbjct 479 CAGGAGTTTTACTCTCGTATGACCCGAATGTTCGGTTGCCTCTCTGGCCTTCTACTGAAG 538 Query 539 CTGCTATAGAAGGCATCAAAAGTATTTGGAATGAGGCTGATATTATCAAGGTAAGCGATG 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 539 CTGCTATAGAAGGCATCAAAAGTATTTGGAATGAGGCTGATATTATCAAGGTAAGTGATG 598 Query 599 ATGAGGTAACGTTTCTAACGCGTGGAGATGCGGAGAAGGATGATGTTGTTTTGTCTCTTA 658 |||||||||| || || || |||||||||||||| ||||||||||||||||||||||| | Sbjct 599 ATGAGGTAACATTCCTCACCCGTGGAGATGCGGAAAAGGATGATGTTGTTTTGTCTCTCA 658 Query 659 TGCATGATAAGCTTAAGCTGCTTATTGTTACTGATGGAGAGAAAGGTTGCAGATACTACA 718 ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 659 TGCATGATAAGCTCAAGCTGCTTATTGTAACTGATGGAGAAAAAGGTTGCAGATACTACA 718 Query 719 CAAAGAAATTCAAAGGGAGAGTGCCTGGATACGCTGTGAAAGCAGTTGACACAACTGGAG 778 |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 719 CAAAGAAATTTAAAGGGAGAGTGCCCGGATACGCTGTGAAAGCAGTTGATACAACTGGAG 778 Query 779 CTGGTGATTCATTTGTTGGTGCATTTCTTGTCTCATTGGGAAAAGATGGCTCCATACTCG 838 |||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||| Sbjct 779 CTGGTGATTCTTTTGTTGGTGCATTTCTTGTCTCACTAGGCAAAGATGGCTCCATACTCG 838 Query 839 ATGATGAAGGGAAGCTGAAGGAAGCACTTGCCTTTGCAAATGCATGTGGAGCAGTGTGTA 898 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 839 ATGATGAAGGGAAGTTGAAGGAAGCACTTGCCTTTGCAAATGCATGTGGAGCTGTGTGCA 898 Query 899 CTACTCAGAAAGGAGCTATTCCTGCACTTCCCACTCCAGCTGATGCTCAAAAGCTCATGA 958 | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 899 CAACTCAGAAGGGAGCTATTCCTGCACTTCCCACTCCATCTGATGCTCAAAAGCTCATGA 958 Query 959 AATCTAAGTCTAAATAG 975 |||||||||| |||||| Sbjct 959 AATCTAAGTCCAAATAG 975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40372169103 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5