BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10265.1
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942831 jgi|Araly1|942831|scaffold_603375.1 387 5e-107
Ahg922431 jgi|Araly1|922431|scaffold_103712.1 135 2e-31
Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152 84.2 7e-16
> Ahg942831 jgi|Araly1|942831|scaffold_603375.1
Length=300
Score = 387 bits (209), Expect = 5e-107
Identities = 272/301 (90%), Gaps = 9/301 (3%)
Strand=Plus/Plus
Query 37 AAACAAGAAAGAAACAAAGAGAAATGAGCTCTGCAAGCAAAACGTGGATGGTTGCTGCAA 96
|||||||| |||||| | | ||||||| |||||||||||||| |||||||| |||||||
Sbjct 4 AAACAAGACAGAAAC--A-A-AAATGAGTTCTGCAAGCAAAACATGGATGGTGGCTGCAA 59
Query 97 GCATCGGAGCCGTTGAGGCATTGAAAGACCAACTAGGCGTGTGTCGTTGGAACTACGTGA 156
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 60 GCATCGGAGCCGTTGAGGCATTAAAAGACCAACTAGGCGTGTGTCGTTGGAACTATGTAA 119
Query 157 TCCGATCTGCGAATCAGTATCTACGCAACAACTTAAGATCCGTGTC-GCAAGCTAAGAAG 215
||||||| |||||||||||||| || |||||||||||||| || || | |||||||||||
Sbjct 120 TCCGATCAGCGAATCAGTATCTCCGAAACAACTTAAGATCTGTTTCTG-AAGCTAAGAAG 178
Query 216 CTCTCTTCCTCATCAATCGATTATACCAACAAGACCAAGCAAGCTGAAGAATCGCTGAGG 275
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 179 CTCTCTTCCTCATCATTCGATTATACCAACAAGACCAAGCAAGCTGAAGAATCGTTAAGG 238
Query 276 ACAGTCATGTACTTGAGCTGTTGGGGTCCTAGTTAATGGACAATGGAGG--GATTTGAAA 333
||||||||||||||||| |||||||||||||||||||| | || ||| |||||||||
Sbjct 239 ACAGTCATGTACTTGAGTTGTTGGGGTCCTAGTTAATGAAAAA-GGATCAAGATTTGAAA 297
Query 334 A 334
|
Sbjct 298 A 298
> Ahg922431 jgi|Araly1|922431|scaffold_103712.1
Length=324
Score = 135 bits (73), Expect = 2e-31
Identities = 203/263 (77%), Gaps = 20/263 (8%)
Strand=Plus/Plus
Query 60 ATGAGCTCTGCAAGCAAAACGTGGATGGTTGCTGCAAGCATCGGAGCCGTTGAGGCATTG 119
||||| || |||||||| | ||| | || ||||||||||||||||||||||| || |
Sbjct 21 ATGAGTTCAACAAGCAAAGCATGGTTAGTAGCTGCAAGCATCGGAGCCGTTGAAGCGTCC 80
Query 120 AAAGACCAACTAGGCGTGTGTCGTTGGAACTACGTGATCCGATCTGCGAATC-A-GTATC 177
|| |||||| ||||| ||||||| ||||||||| |||||||||| | ||||| | |||||
Sbjct 81 AAGGACCAATTAGGCATGTGTCGCTGGAACTACTTGATCCGATCAGTGAATCAACGTATC 140
Query 178 TACGCAACAACTTAAGATCCG-TGTCGCAAG-CTA-AGAAGCTC-TCTT---CC-TCATC 229
|| |||||| | ||||||| | || || | | | ||| ||| |||| || || ||
Sbjct 141 --CGTAACAACGTGAGATCCGCT-TCTCAGGCCAACAGATTCTCTTCTTCAACCGTCGTC 197
Query 230 -AAT-CGATT-A-TAC--CAACAAGACCAAGCAAGCTGAAGAATCGCTGAGGACAGTCAT 283
| || || | || |||||| | ||||| ||||| || || || ||||| |||||
Sbjct 198 GCGTCCG-TTAAGGACGATAACAAGGCAAAGCAGGCTGAGGAGTCACTTAGGACGGTCAT 256
Query 284 GTACTTGAGCTGTTGGGGTCCTA 306
|||||||||||||||||||||||
Sbjct 257 GTACTTGAGCTGTTGGGGTCCTA 279
> Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152
Length=270
Score = 84.2 bits (45), Expect = 7e-16
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 258 GCTGAAGAATCGCTGAGGACAGTCATGTACTTGAGCTGTTGGGGTCCTAGTTAA 311
|||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 217 GCTGAAGAATCGCTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAATTAA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15872725024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5