BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10270.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152 396 9e-110
Ahg922431 jgi|Araly1|922431|scaffold_103712.1 141 4e-33
> Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152
Length=270
Score = 396 bits (214), Expect = 9e-110
Identities = 254/273 (93%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 72 ATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGCATTA 131
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTTCTACAAGCAAAGCATGGACGGTGGCAGTGAGCATCGGAGCTGTAGAGGCATTA 60
Query 132 AAAGACCAACTAGGTCTTTGTCGGTGGAACTACATACTCCGGTCGGTTAATCAACATCTC 191
||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 61 AAAGACCAATTAGGTCTTTGTAGGTGGAACTACATACTCCGGTCAGTGAATCAACATCTA 120
Query 192 CGGAACAACGTTAGATCTGTTTCTCAAGGGAAAAGGTTCTCTTCGTCTTCTGTCTCCGCA 251
||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 121 CGGAACAACGTCAGATCTGTTTCTCAAGGGAAAAGGTTTTCTTCG---TCTGTCTCCGCC 177
Query 252 GCCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCTCTTAGAACA 311
|| ||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 178 GCGGTTACCTCCTCCGGTGAGAGTGAGAAGGCGAAAAAGGCTGAAGAATCGCTTAGAACA 237
Query 312 GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA 344
|||||||||||||||||||||||||||||||||
Sbjct 238 GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA 270
> Ahg922431 jgi|Araly1|922431|scaffold_103712.1
Length=324
Score = 141 bits (76), Expect = 4e-33
Identities = 214/278 (77%), Gaps = 19/278 (7%)
Strand=Plus/Plus
Query 68 AAAGATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGC 127
|||||||||||| ||||||||||||||| ||| || | |||||||||||||| || ||
Sbjct 17 AAAGATGAGTTCAACAAGCAAAGCATGGTTAGTAGCTGCAAGCATCGGAGCCGTTGAAGC 76
Query 128 ATTAAAAGACCAACTAGGTC-TTTGTCGGTGGAACTACAT-ACTCCGGTCGGTTAATCAA 185
| || |||||| |||| | | ||||| ||||||||| | | |||| || || ||||||
Sbjct 77 GTCCAAGGACCAATTAGG-CATGTGTCGCTGGAACTACTTGA-TCCGATCAGTGAATCAA 134
Query 186 CATCTCCGGAACAACGTTAGATCTGTTTCTCAAGG-GAAAAGGTTCTCTTCGTCTTCTGT 244
| | |||| |||||||| ||||| | ||||| ||| || || |||||||| || | ||
Sbjct 135 CGTATCCGTAACAACGTGAGATCCGCTTCTC-AGGCCAACAGATTCTCTTCTTCAACCGT 193
Query 245 C-TCCGCAG-CCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCT 302
| | ||| | |||||| | | | | | | ||||| ||| ||||||| || ||
Sbjct 194 CGT-CGC-GTCCGTTA--AGGAC-GAT-A-A-C---AAGGCAAAGCAGGCTGAGGAGTCA 242
Query 303 CTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAA 340
||||| || |||||||||||||||||||||||||||||
Sbjct 243 CTTAGGACGGTCATGTACTTGAGCTGTTGGGGTCCTAA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5