BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10280.1 Length=633 Score E Sequences producing significant alignments: (Bits) Value Ahg942835 jgi|Araly1|942835|scaffold_603379.1 654 0.0 > Ahg942835 jgi|Araly1|942835|scaffold_603379.1 Length=463 Score = 654 bits (354), Expect = 0.0 Identities = 418/449 (93%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 98 AAAGTTGTGAAAATCCAAATGGGTAATCATTTTTTAACGTTATCTCTGCTTCTCGTAACA 157 |||||||||||| |||||||||||||||||||| |||| || |||||||||||||||||| Sbjct 3 AAAGTTGTGAAATTCCAAATGGGTAATCATTTTCTAACTTTGTCTCTGCTTCTCGTAACA 62 Query 158 GTCTGCGTTTGCGTTTCTTTCATCACCACGAAGCTAAACCCTAAAGAAGCAA-TCGTATC 216 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 63 GTCTGCGTTTGCGTTTCCTTCATCACCACGAAGCTAAACCCTAAAGAAGCAATTC-TATC 121 Query 217 TGTCTCTTCCGATTCTGAGATTCCTACTGAAATTCATGGTGTCAAGATCTTGCGTCAAGC 276 |||||| ||||||||||||||||||||||||||||| || ||||| ||| |||||||||| Sbjct 122 TGTCTCCTCCGATTCTGAGATTCCTACTGAAATTCACGGAGTCAAAATCATGCGTCAAGC 181 Query 277 TTC-AGATACCAAACTTGCTCAATTAGGCGTTGCCTCTTGGCCCAAGTGGGAAGGTGCTC 335 ||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||||||| Sbjct 182 TTCTA-ATACCAAACTTGCTCAACTAGGCGTAGCTTCTTGGCCCAAGTGGGAAGGTGCTC 240 Query 336 CAAGCAAGTTTCCATGGGAGTTTAAGAAGACAGAGACAATATATTTCATGGAAGGGAAAG 395 ||||||||||||||||||||||||||||||| || || || ||||||||||||||||||| Sbjct 241 CAAGCAAGTTTCCATGGGAGTTTAAGAAGACGGAAACGATGTATTTCATGGAAGGGAAAG 300 Query 396 TGAAAGTGAATGTAGACGGATACGACGAAGAAGAAGAAACCTTTGAGATAGGGAAAGGAG 455 ||||||||||||| || |||| |||||||||||||||||| || |||||||||||||||| Sbjct 301 TGAAAGTGAATGTTGATGGATTCGACGAAGAAGAAGAAACATTCGAGATAGGGAAAGGAG 360 Query 456 ATGTTGTTGTTTTCCCTAAAGATATGAAAGTTGTTTGGGAGATAACTGAAGCTGTGAAGA 515 ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 361 ATGTTGTTGTTTTCCTTAAAGATATGAAAGTGGTTTGGGAGATAACTGAGGCTGTGAAGA 420 Query 516 AGCAATATAGCTTAGAGGAGTAGTGACTT 544 | || |||||||||||||||||||||||| Sbjct 421 AACATTATAGCTTAGAGGAGTAGTGACTT 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23178733536 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5