BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10280.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942835 jgi|Araly1|942835|scaffold_603379.1                        654    0.0  


> Ahg942835 jgi|Araly1|942835|scaffold_603379.1
Length=463

 Score =  654 bits (354),  Expect = 0.0
 Identities = 418/449 (93%), Gaps = 4/449 (1%)
 Strand=Plus/Plus

Query  98   AAAGTTGTGAAAATCCAAATGGGTAATCATTTTTTAACGTTATCTCTGCTTCTCGTAACA  157
            |||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct  3    AAAGTTGTGAAATTCCAAATGGGTAATCATTTTCTAACTTTGTCTCTGCTTCTCGTAACA  62

Query  158  GTCTGCGTTTGCGTTTCTTTCATCACCACGAAGCTAAACCCTAAAGAAGCAA-TCGTATC  216
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct  63   GTCTGCGTTTGCGTTTCCTTCATCACCACGAAGCTAAACCCTAAAGAAGCAATTC-TATC  121

Query  217  TGTCTCTTCCGATTCTGAGATTCCTACTGAAATTCATGGTGTCAAGATCTTGCGTCAAGC  276
            |||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct  122  TGTCTCCTCCGATTCTGAGATTCCTACTGAAATTCACGGAGTCAAAATCATGCGTCAAGC  181

Query  277  TTC-AGATACCAAACTTGCTCAATTAGGCGTTGCCTCTTGGCCCAAGTGGGAAGGTGCTC  335
            ||| | ||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct  182  TTCTA-ATACCAAACTTGCTCAACTAGGCGTAGCTTCTTGGCCCAAGTGGGAAGGTGCTC  240

Query  336  CAAGCAAGTTTCCATGGGAGTTTAAGAAGACAGAGACAATATATTTCATGGAAGGGAAAG  395
            ||||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct  241  CAAGCAAGTTTCCATGGGAGTTTAAGAAGACGGAAACGATGTATTTCATGGAAGGGAAAG  300

Query  396  TGAAAGTGAATGTAGACGGATACGACGAAGAAGAAGAAACCTTTGAGATAGGGAAAGGAG  455
            ||||||||||||| || |||| |||||||||||||||||| || ||||||||||||||||
Sbjct  301  TGAAAGTGAATGTTGATGGATTCGACGAAGAAGAAGAAACATTCGAGATAGGGAAAGGAG  360

Query  456  ATGTTGTTGTTTTCCCTAAAGATATGAAAGTTGTTTGGGAGATAACTGAAGCTGTGAAGA  515
            ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  361  ATGTTGTTGTTTTCCTTAAAGATATGAAAGTGGTTTGGGAGATAACTGAGGCTGTGAAGA  420

Query  516  AGCAATATAGCTTAGAGGAGTAGTGACTT  544
            | || ||||||||||||||||||||||||
Sbjct  421  AACATTATAGCTTAGAGGAGTAGTGACTT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5