BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10300.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489873 jgi|Araly1|489873|fgenesh2_kg.6__3007__AT4G10300.1 854 0.0
> Ahg489873 jgi|Araly1|489873|fgenesh2_kg.6__3007__AT4G10300.1
Length=672
Score = 854 bits (462), Expect = 0.0
Identities = 619/690 (90%), Gaps = 30/690 (4%)
Strand=Plus/Plus
Query 71 CTGAGAACAACT-AAGTTAAAGGGAAAGCAAAAATGGGCTGCATCGGTGTTGTGAATGTA 129
|||| ||||| | || ||||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct 1 CTGAAAACAATTAAATTTAAA-GGAATGCAAAAATGGGCTGCATCGGTCTTGTGAATTTA 59
Query 130 ACAAGCATAAATCCATATCTCACAAGAAGATCAAACAAACCCTACAATTCAAGAAGACCA 189
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 60 ACAAGCATCAATCCATATCTCACAAGAACATCAAACAAACCCTACAATTCAAGAAGAGCA 119
Query 190 TCATCCATGGCTGCTGCGATTAGAGCT--G--AGT--CTACTGAGAAATTAGGGATTACA 243
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 120 TCATCCATGGCTGCTGCGATTAGAGCTGAGTCAGTAGCTACTGAGAAATTAGGGATTACA 179
Query 244 ATTGAAAAGAATCC-TCCTGAGTCCAAACTAACCCAACTCGGTGTTCGTAGTTGGCCCAA 302
||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 180 ATTGAGAAGAATCCAT-CTGAGTCCAAACTCACCCAACTCGGTGTTCGTAATTGGCCCAG 238
Query 303 GTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACTTACAGTGCAAAGGAGACTTGTTATTT 362
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 239 GTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACTTATAGTGCAAAGGAGACTTGTTATCT 298
Query 363 ACTACAAGGAAAAGTGAAAGTGTACCCTAATGGATCCGATGAAGGCGTAGAGATCGAAGC 422
||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 299 GCTAGAAGGCAAAGTGAAAGTGTACCCTGATGGTTCCGATGAAGGCGTAGAGATCGAAGC 358
Query 423 AGGCGACTTTGTTGTTTTCCCTAAAGGAATGAGTTGCACTTGGGATGTCTCTGTTGCTGT 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGCGACTTTGTTGTCTTCCCTAAAGGAATGAGTTGCACTTGGGATGTCTCTGTTGCTGT 418
Query 483 TGATAAACATTACCAATTCGAGTGAATGGCTGCTATCAATCTCTGCTCTACGTATTCGTG 542
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 419 TGATAAACATTACCAATTCGAATAAATGGCTGCTATCAATCTCTGCTCTACATATTCGTG 478
Query 543 TATTCGATAGGACTTGACCATCTTTGTATGTTGATGGATACTTACTTTAAGCTTGTGTGA 602
|||||||||||||||||| ||||||||||||||||| ||||||| ||| | | ||| |
Sbjct 479 TATTCGATAGGACTTGACTATCTTTGTATGTTGATGAATACTTAGTTTT-G-TC-TGTCA 535
Query 603 -AGT-T-TTTTA-CTTTAGTGGAAATAGAGGAGTCATATATGGACGCATTATCTCATTCA 658
| | | ||||| |||||||||||| ||| | |||| |||||||||||| |||| |
Sbjct 536 TA-TATATTTTAGCTTTAGTGGAAACAGA--A-TCAT----GGACGCATTATCCCATT-A 586
Query 659 ACACCAAAGTCATTCGAAGTTCGATACAATAACATGTATAGTGTTTACTGTCGAAAAGTA 718
| | |||||||||| ||||||| |||||||||||| ||||| ||| || ||||||||||
Sbjct 587 ATATCAAAGTCATTTGAAGTTCAATACAATAACAT--ATAGTTTTTCCTATCGAAAAGTA 644
Query 719 AATAATTGATAATAGAAGTGATATTCACGT 748
||||||| |||| |||||||||||||||
Sbjct 645 --TAATTGAAAATACAAGTGATATTCACGT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5