BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10310.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489874 jgi|Araly1|489874|fgenesh2_kg.6__3008__AT4G10310.1 2307 0.0
> Ahg489874 jgi|Araly1|489874|fgenesh2_kg.6__3008__AT4G10310.1
Length=1686
Score = 2307 bits (1249), Expect = 0.0
Identities = 1573/1720 (91%), Gaps = 59/1720 (3%)
Strand=Plus/Plus
Query 1 GCTTAAACCGACTCGAGAACTAAAATGGACAGAGTGGTGGCAAAAATAGCAAAAATCCGT 60
||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1 GCTTAAACCGACTAGAGAACTAAAATGGACAGAGTTGCGGCAAAAATAGCTAAAATCCGT 60
Query 61 TCGCAGCTTACT-AAAT-TACGTTCACTATTCTTCCTTTACTTCATCTACTTCTTGTTCT 118
|||||||||| | |||| || ||||||||||||| || || ||||||||||||||| |||
Sbjct 61 TCGCAGCTTA-TGAAATCTA-GTTCACTATTCTTACTCTATTTCATCTACTTCTTGCTCT 118
Query 119 TCTCCTTTTTAGGGTTTTTGGCACTCAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 119 TCTCCTTTTTAGGGTTCTTGGCTCTAAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178
Query 179 ATGACTTTGACCTTTTCTTCACTTCTGTCTCTGCCATCACCGTCTCTTCCATGTCTACCG 238
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 ATGACTTGGACCTTTTCTTCACTTCTGTCTCTGCCATCACTGTCTCTTCCATGTCTACCG 238
Query 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTCG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTTG 298
Query 299 GTGGCGAAATCTTCACCTCCTTTCTCAACCTCTACGTCTC--CTATTTCACCAAGTTCGT 356
||||||||||||||||||||||||||||||||| | || | |||||||||| |||||
Sbjct 299 CCGGCGAAATCTTCACCTCCTTTCTCAACCTCTAC-TTTCAAC-ATTTCACCAACTTCGT 356
Query 357 CTTCCCTCATAACAAGATTAGACATATTTTGGGATCTTATAATTCGGACAGTTCCATCGA 416
||||||||| ||||||||||||||| || ||||||| | | || | | | ||
Sbjct 357 CTTCCCTCACAACAAGATTAGACATCTTGTGGGATC-T-T--TT---A-A----C-TC-- 401
Query 417 GGATCGCTGTGACGTTGAGACTGTTACTGATTATCGCGAGGGTCTTATCAAGATCGATGA 476
||| || |||||| | ||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 402 GGACCGTTGTGACCTCGAGACTGTTACTGATCATCGCGAGGGTCTTAGCAAGATCGAAGA 461
Query 477 AAGGGCATCTAAGTGCTTGTACTCGGTGGTTCTTAGTTACCATCTTGTTA-CTAACCTAG 535
||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||
Sbjct 462 AAGGGCATCTAAGTGTTTGTACTCGGTGGTTCTTAGTTACCATCTTG-TATCAAACCTAG 520
Query 536 TTGGCTCTGTGTTGCTTCTTGTGTACGTAAATTTTGTTAAAACGGCGAGAGATGTTCTTA 595
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 521 TTGGCTCTGTGTTGCTTCTTGTGTACGTAAACTTTGTTAAAACGGCGAGAGATGTTCTTA 580
Query 596 GTTCCAAAGAAATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAA 655
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GCTCAAAAGATATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAA 640
Query 656 ACTGCGGATTTGTCCCCACGAATGAGAACATGATCATCTTTCGCAAGAACTCTGGTCTCA 715
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 641 ACTGCGGATTCGTCCCCACGAATGAGAATATGATCATCTTTCGCAAGAACTCTGGACTCA 700
Query 716 TCTGGCTCCTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGTTT 775
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 701 TCTGGCTCTTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGCTT 760
Query 776 TGCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTATGGTTACATTCTCAAGA 835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 761 TGCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTTTGGTTACATTCTAAAGA 820
Query 836 ACCACAATAAGATGGGATACTCTCATCTACTCTCGGTTCGTCTATGTGTTCTTCTTGGAG 895
|||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 821 ACCAAAAAAAGATGGGATACTCTCATCTACTCTCCGTACGTCTATGTGTTCTTCTTGGAG 880
Query 896 TGACGGTGCTAGGGTTTCTGATAATACAGCTTCTTTTCTTCTGCGCCTTTGAATGGACCT 955
| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 881 TAACGGTGCTAGGGTTTCTAATAATACAGCTTCTTTTCTTCTGTGCCTTTGAGTGGACCT 940
Query 956 CTGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGATCGTTGTTTCAAGTGG 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 941 CTGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGGTCGTTGTTTCAAGTGG 1000
Query 1016 TGAATTCGCGACACACCGGAGAAACTATAGTAGACCTCTCTACACTTTCCCCAGCTATCT 1075
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1001 TGAATTCGCGACATACCGGAGAAACTATTGTTGACCTCTCTACACTTTCCCCAGCCATCT 1060
Query 1076 TGGTACTCTTTATTCTTATGATGTATCTTCCTCCATACACTTTATTTATGCCGTTGACGG 1135
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1061 TGGTACTCTTTATTCTTATGATGTATCTTCCTTCATACACATTATTTATGCCGTTGACGG 1120
Query 1136 AACAAAAGACGATAGAGAAAGAAGGAGGAGATGATGATTCCGAAAATGGAAAGAAAGTTA 1195
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
Sbjct 1121 AACAAAAGACGATAGAGAAAGAAGGAG-A--TGATGATTCCGGAAATGGAAAGAAAGTGA 1177
Query 1196 AAAAGAGTGGACTCATCGTGTCACAACTTTCCTTTTTGACGATATGTATCTTTCTCATTT 1255
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1178 CAAAGAGTGGACTCTTCGTGTCACAACTTTCCTTTTTGACGATATGCATCTTTCTCATTT 1237
Query 1256 CAATCACCGAAAGGCAAAATCTACAACGTGATCCGA-TAAATTTCAACGTCCTTAACATC 1314
| ||||||||||||||||| |||| ||| ||||| | | |||||||| ||||||||||||
Sbjct 1238 CGATCACCGAAAGGCAAAAACTACGACGCGATCC-ACTCAATTTCAATGTCCTTAACATC 1296
Query 1315 ACTCTCGAAGTTATCAGTGCATATGGAAACGTTGGTTTCACTACCGGGTACAGCTGTGAA 1374
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1297 ACTCTCGAAGTTATCAGTGCATATGGAAACGTGGGTTTCACTACCGGGTACAGCTGTGAA 1356
Query 1375 CGGCGTGTGGACATCAGCGATGGTGGCTGCAAAGACGCGAGTTATGGGTTTGCAGGACGA 1434
|||||| ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1357 CGGCGTCTGGACATCAGCGACGGTAGCTGCAAAGACGCGGGTTATGGATTTGCAGGACGA 1416
Query 1435 TGGAGTCCAATGGGAAAATTCGTACTAATAATAGTAATGTTTTATGGTAGGTTTAAGCAG 1494
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1417 TGGAGTCCTGTCGGAAAATTCGTACTAATAATAGTAATGTTTTATGGGAGGTTTAAGCAG 1476
Query 1495 TTCACAGCCAAATCTGGCCGCGCATGGATTCTTTACCCCTCGTCTTCCTAACATATTTCG 1554
|||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| |
Sbjct 1477 TTCACAGCCAAATCTGGCCGAGCATGGATACTTTATCCCTCCTCTTCCTAACATAT--C- 1533
Query 1555 ATCATATATAAATGTTATATTAAAATTAGTCAC-T-T-T---T--AGCATTCCTTTTCTG 1606
|| ||||| || |||||||| |||||||||| | | | | | || ||||||||||||
Sbjct 1534 AT-ATATA-AA-TGTTATATAAAAATTAGTCTCGTGTGTCACTTTAGTATTCCTTTTCTG 1590
Query 1607 TGAGTGATGTACAATAAGTTTGTATGTAG-TTTGCATCATCGTTAATC-------C--T- 1655
|| ||||||||||||||||||||||||| ||| ||||||||||||| | |
Sbjct 1591 TG--TGATGTACAATAAGTTTGTATGTAGGTTT-CATCATCGTTAATAATATTAACGATT 1647
Query 1656 CGTTAATATTATGATAATGTATGAAGATATAATATAAGGA 1695
|||||||||||| | |||||||||| ||||||| ||||||
Sbjct 1648 CGTTAATATTATTA-AATGTATGAAAATATAATTTAAGGA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5