BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10330.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489876 jgi|Araly1|489876|fgenesh2_kg.6__3010__AT4G10330.1 863 0.0
> Ahg489876 jgi|Araly1|489876|fgenesh2_kg.6__3010__AT4G10330.1
Length=899
Score = 863 bits (467), Expect = 0.0
Identities = 533/565 (94%), Gaps = 3/565 (1%)
Strand=Plus/Plus
Query 4 AGGGACGATGAGCAACAGAAGAAGAACCGGAGACGATGACAAAGGATTGCTCTGGAAACT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGACGATGAGCAACAGAAGAAGAACCGGAGACGATGACAAAGGATTGCTCTGGAAACT 60
Query 64 TCCCCAAGTTAGGATCAGA-GACATTGGAAAAGTTGGTCCAGCTTTTGGACTCGGTGTCG 122
||||||||| ||||||| | ||||| |||||||||||||| || |||||||||||| |||
Sbjct 61 TCCCCAAGTAAGGATCA-ACGACATCGGAAAAGTTGGTCCGGCCTTTGGACTCGGTTTCG 119
Query 123 GTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGGTGTAGGATTCGGACCAGGAGTTC 182
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GTTGCGGATTCGGTTTCGGCGCCGGTCTTATCGGAGGTGTAGGATTCGGGCCAGGAGTTC 179
Query 183 CTGGATTACAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGTTTTGGCT 242
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 CTGGATTGCAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGATTTGGCT 239
Query 243 ATGGTGTTGGAAGAGGAGCTGCTTATGATCACTCTCGTTCTTATTACAACGTTGGAAAAC 302
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 ATGGTGTTGGAAGAGGAGCTGCTTATGACCACTCTCGTTCTTATTACAACGTTGGAAAAC 299
Query 303 CATCTCTGAATGAAGTTGATTCACTGATTGATGAACTTGTTGTTAGCACGAAGAAGCTTG 362
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 300 CATCTCTGAATGAAGTTGATTCACTAATTGATGAACTTGTTGTTAGCACCAAGAAGCTTG 359
Query 363 TGAAAGCTACTACAAATGAAATCGACAAGTGGTTAAAATGATGAACTTTTAGGATTTGTT 422
|||||||||| || |||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 360 TGAAAGCTACGACGAATGAAATCGACAAGTGGATCAAATGATGAACTTTTAGCTTTTGTT 419
Query 423 GCAGCTTCCAAGTAAATGGTAGTGTTTGGTTTGTTCTTAGATCAATAATGTAGATTTGGG 482
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 420 GCAGCTTCCAAGTAAATGGTAGTGTTTGGTTTGTTCTTAGATCAAGAATGTAGACCTGGG 479
Query 483 GCTAGTGATAATCTCCTTTCTTTTTGTACAATTTTACGTATGGTATAAAGATGGATTCGC 542
|||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 GCTAGTGA-AATCTCTTTTCTTTTTGTACAATTTTACGTATGGTATACAGGCGGATTCGC 538
Query 543 ATAATTTAGGTGGCTGATTTATCAT 567
||||||| |||| ||||||||||
Sbjct 539 ATAATTTTCATGGCAGATTTATCAT 563
Score = 278 bits (150), Expect = 7e-74
Identities = 177/190 (93%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 819 TCTATGTACATGATCCTGCGGCTCAATCGCTTCAGTTTCGATCCACATGATGTATATGTT 878
||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||
Sbjct 711 TCTATGTACATGATCGTGCGGCTCAATCGCTTCAGTTTTGATCCACATGATTTACATGTT 770
Query 879 ATAGAATTGTGGGA-AACTCCTTGTAGAAAGAGTATGTTCACGTCTAGGACTAGTCGGAT 937
||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 771 ATAGACTTGTGGGATAACTCCTTGCAGAAAGAGTATGTTCACTTCTAGGACAAGTCGGAT 830
Query 938 GATTCGTTTCTCTTTTTGGTGTAATGAGTATGTTCATAACTGTTGATACAATGTGAAAAT 997
|||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 831 GATTCGGTTCT-TTTTTGGTGTAATGAGTATGTTCATAACTGTTGATCCCATGTGAAAAT 889
Query 998 CTAACCGTTG 1007
||||||||||
Sbjct 890 CTAACCGTTG 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5