BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10340.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489877 jgi|Araly1|489877|fgenesh2_kg.6__3011__AT4G10340.1 1892 0.0
> Ahg489877 jgi|Araly1|489877|fgenesh2_kg.6__3011__AT4G10340.1
Length=1193
Score = 1892 bits (1024), Expect = 0.0
Identities = 1148/1205 (95%), Gaps = 20/1205 (2%)
Strand=Plus/Plus
Query 1 ACATCAGCATCCACAACCAATCAGAGGACAGAATCATATTTCACATTTTCAATCCAGACC 60
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ACATCAGCATCAACAACCAATCAGAGAACAGAATCATATTTCACATTTTCAATTCAGACC 60
Query 61 AATCAAAATCCTGAACGAATCCTACTCTCCACCTTATAGGAGCAGTTTCGTCTCTTCCTC 120
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AATCAAAATCGTAAACGAATCCTACTCTCCACCTTATAGTAGCAGTTTCGTCTCTTCCTC 120
Query 121 CTTCTTTCACTTAGCTCTTCCTAGTGTTAAACCAGAGTAAAGC-------TTGAAACTTT 173
|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 121 CTCCTTTCACTTAGCTCTTCCTAGTGTTAAACCAGACTAAAGCTTGAAAGTTGAAACTTT 180
Query 174 GGACTAAAAGAATGGCGTCTTTGGGTGTGTCGGAAATGCTTGGTACTCCCCTTAACTTCA 233
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GGGCTAAAAGAATGGCGTCTTTGGGTGTGTCGGAAATGCTTGGTACTCCTCTTAACTTCA 240
Query 234 GGGCAGTTTCAAGATCGTCTGCTCCGTTGGCATCAAGCCCATCCACGTTCAAGACTGTTG 293
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GGGCAGTTTCAAGATCGTCTGCTCCGTTGGCATCAAGCCCGGCCACGTTCAAGACTGTTG 300
Query 294 CTCTCTTCTCTAAGAAAAAGCCAGCTCCTGCTAAGTCCAAGGCTGTCTCTGAGACTAGCG 353
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CTCTGTTCTCTAAGAAAAAGCCAGCTCCTGCTAAGTCCAAGGCTGTCTCCGAGACTAGCG 360
Query 354 ATGAGCTCGCCAAGTGGTATGGTCCTGACAGGAGAATTTTCTTGCCTGATGGTCTTTTGG 413
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGAGCTCGCTAAGTGGTATGGTCCTGACAGGAGAATTTTCTTGCCTGATGGTCTTTTGG 420
Query 414 ATAGATCAGAGATCCCAGAGTACTTAAACGGTGAAGTTGCTGGAGATTATGGTTATGACC 473
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAGATCAGAGATTCCAGAGTACTTAAACGGTGAAGTTGCTGGAGATTATGGTTATGACC 480
Query 474 CATTTGGTCTTGGAAAGAAGCCTGAGAACTTTGCTAAATACCAAGCTTTTGAATTGATCC 533
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CATTTGGTCTTGGAAAGAAGCCTGAGAACTTTGCTAAATACCAAGCCTTTGAATTGATCC 540
Query 534 ATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAAT 593
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 ATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATCCCTGAAGCTTTAAACAAAT 600
Query 594 ATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGACTGGTGCTTTGCTTCTTGATG 653
| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 601 ACGGCGCTAAGTGTGGCCCCGAAGCTGTTTGGTTTAAGACTGGTGCTTTGCTTCTTGATG 660
Query 654 GAAACACATTGAACTACTTTGGCAAGAACATCCCTATCAACCTTGTTCTCGCCGTAGTTG 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 GAAACACATTGAACTACTTTGGCAAGAACATCCCAATCAACCTTGTTCTCGCCGTAGTTG 720
Query 714 CTGAGGTTGTTCTCCTCGGTGGAGCCGAGTACTACAGAATCACCAACGGATTGGATTTCG 773
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 721 CTGAGGTTGTTCTCCTCGGTGGAGCCGAGTACTACAGAATCACCAACGAATTGGATTTTG 780
Query 774 AGGACAAGCTACACCCAGGAGGTCCATTTGATCCTCTAGGCCTTGCTAAGGACCCTGAGC 833
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 781 AGGACAAGCTACACCCAGGAGGTCCATTTGATCCTCTAGGACTCGCTAAGGACCCTGATC 840
Query 834 AAGGAGCTCTTCTCAAAGTCAAAGAGATCAAGAACGGGAGATTAGCCATGTTTGCGATGC 893
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGGAGCTCTTCTCAAGGTCAAAGAGATCAAGAACGGGAGATTAGCCATGTTTGCGATGC 900
Query 894 TCGGTTTCTTTATCCAAGCGTATGTTACCGGAGAAGGTCCTGTTGAGAACCTTGCAAAGC 953
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 TCGGTTTCTTCATCCAAGCTTATGTTACCGGAGAAGGTCCTGTTGAGAACCTTGCGAAGC 960
Query 954 ATCTCAGTGATCCTTTTGGAAACAACTTGCTTACCGTCATCGCTGGAACTGCCGAGAGAG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 ATCTCAGTGATCCTTTTGGAAACAACTTGCTTACCGTCATCGCTGGAACTGCTGAGAGAG 1020
Query 1014 CTCCCACTCTCTAAGCCATTTCTACtttttttAAGAGCTTCCAAAATGTACACTTTGTTC 1073
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 CTCCCACTCTCTAAGCCATTTCTACTTTTT--AAGAGCTTCCAAAATGTACACTTTGTTC 1078
Query 1074 GATTGGAACTCCTTTTGACAATGTTaaaaaaaCTTCCATCTGAATCTTCTTGATATATTT 1133
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1079 GATTGGAACTCCTTTTGACAATGTTAAAAAA-CTTCCATCTGAATCTTCTTGA-ATATTT 1136
Query 1134 CAAATTTTCAATGGTGCTTTATCA-TGCTTCTAAGGATATACATAGTCACCCATTGGTTT 1192
||| | |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1137 CAA-T-------GGTGCTTTATCAATGCTTCTAAAGATATACATAGTCACCCATTGGTTT 1188
Query 1193 AATAT 1197
||||
Sbjct 1189 TATAT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5