BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10350.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895168 jgi|Araly1|895168|Al_scaffold_0006_3164 1659 0.0
> Ahg895168 jgi|Araly1|895168|Al_scaffold_0006_3164
Length=1029
Score = 1659 bits (898), Expect = 0.0
Identities = 986/1029 (96%), Gaps = 3/1029 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCTTCGTCGAACGGAGGAGTGCCACCTGGTTTCCGGTTTCATCCGACGGACGAA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTTCGTCGTCGAACGGAGGAGTGCCACCTGGTTTTCGGTTTCATCCGACGGACGAA 60
Query 61 GAGCTTCTCCATTACTACTTGAAGAAGAAAATCTCTTACCAAAAGTTTGAGATGGAAGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTCTCCATTACTACTTGAAGAAGAAAATCTCTTACCAAAAGTTTGAGATGGAAGTC 120
Query 121 ATCAGAGAGGTTGACTTAAACAAGCTTGAGCCTTGGGATTTGCAAGAGAGATGCAAGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGAGAGGTTGACTTAAACAAGCTTGAGCCTTGGGATTTGCAAGAGAGATGCAAGATA 180
Query 181 GGATCAACACCACAAAACGAATGGTACTTCTTCAGCCACAAGGACAGGAAATATCCGACG 240
|| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GGGTCAACACCGCAGAACGAATGGTATTTCTTCAGCCACAAGGACAGGAAATATCCGACA 240
Query 241 GGGTCAAGGACCAACCGTGCTACTCATGCAGGGTTCTGGAAGGCGACGGGACGTGACAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTCAAGGACCAACCGTGCTACTCATGCAGGGTTCTGGAAGGCGACGGGACGTGACAAG 300
Query 301 TGCATAAGGAACTCTTACAAAAAGATAGGAATGAGGAAGACACTTGTGTTCTACAAAGGT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCATAAGGAACTCTTACAAGAAGATAGGAATGAGGAAGACACTTGTGTTCTACAAAGGT 360
Query 361 AGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 AGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACCCT 420
Query 421 GATGATCCTCAAGCCAACCCTAGTGAAGATGGATGGGTGGTATGTAGAGTGTTTATGAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATGATCCTCAAGCCAACCCTAGTGAAGATGGATGGGTGGTATGTAGAGTGTTCATGAAG 480
Query 481 AAAAATTTGTTCAAGGTAGTAAATGAAGGTAGCTCAAGCATTAACTCATTGGACCAACAC 540
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 481 AAAAATTTGTTCAAGGTAGTAAATGAAGGTGGCACAAGCATTAACTCATCGGACCAACAC 540
Query 541 AACCATGACGCATCTAACAACAACCATGCACTTCAAGCTCGTAGCTTTATGCACCGAGAC 600
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AACCATGATGCATCCAACAACAACCACACACTTCAAGCTCGTAGCTTTATGCACCGAGAC 600
Query 601 AGTCCATACCAGCTAGTACGTAACCACGGAGCCATGACATTCGAACTTAACAAGCCTGAC 660
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 601 AGTCCATACCAGCTTGTACGTAACCACGGAGCCACGACATTTGAACTCAACAAGCCTGAC 660
Query 661 CTTGCTCTTCATCAATACCCACCAATCTTCCACAAGCCACCTTCACTTGGATTTGACTAC 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTACTCTTCATCAATACCCACCAATCTTCCACAAGCCACCTTCACTTGGATTTGACTAC 720
Query 721 TCTTCAGGACTTGCAAGGGACAGTGAGAGTGCGGCTAGTGAAGGGTTACAATACCAGCAA 780
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 721 TCCTCAGGACTTGCAAGGGACTGTGAGAGTGCGGCGAGTGAAGGGTTACAATACCAGCAA 780
Query 781 GCGTGTGAGCCGGGTTTAGACGTTGGTACATGTGAGACAGTGGCTAGTCAT-A-A-TCAT 837
|||||||||||||||||||| || ||||| |||| |||||||||||||||| | | ||||
Sbjct 781 GCGTGTGAGCCGGGTTTAGAGGTCGGTACTTGTGGGACAGTGGCTAGTCATGATAGTCAT 840
Query 838 CAACAAGGTCTAGGTGAATGGGCAATGATGGATAGACTTGTGACTTGTCACATGGGAAAT 897
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAACAAGGTTTAGGTGAATGGGCAATGATGGATAGACTTGTGACTTGTCACATGGGAAAT 900
Query 898 GAAGATTCCTCTAGAGGGATTACGTATGAGGATGGTAACAACAATTCGTCCTCTGTGGTT 957
|||||||||||||||||||||| || ||||||||||||||||||||| || ||||| ||
Sbjct 901 GAAGATTCCTCTAGAGGGATTAGGTTTGAGGATGGTAACAACAATTCTTCGTCTGTTGTC 960
Query 958 CAGCCAGTTCCCGCGACGAACCAGCTAACATTGCGTAGTGAGATGGATTTCTGGGGTTAT 1017
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 961 CAGCCAGTTCCTGCGACGAACCAGCTTACGTTGCGCAGTGAGATGGATTTCTGGGGTTAT 1020
Query 1018 TCTAAATAG 1026
|||||||||
Sbjct 1021 TCTAAATAG 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5