BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10360.1
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942849 jgi|Araly1|942849|scaffold_603393.1 1303 0.0
> Ahg942849 jgi|Araly1|942849|scaffold_603393.1
Length=843
Score = 1303 bits (705), Expect = 0.0
Identities = 800/846 (95%), Gaps = 6/846 (1%)
Strand=Plus/Plus
Query 79 TCAAAGGAAGAAACTTTAAAATGACAACCGATTCTGATGATGGTTTCGTTTCTTCAAGAC 138
|||||| ||||| |||||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 1 TCAAAGCAAGAATCTTTAAAATGACGACCGGTTTTGATGATGCTTTCGTTTCTTCAAGAC 60
Query 139 AACTCCTTTTGCTTGCTTCGATTTG-TTCTGGTGCTCTCATGTGCAAAATCGTTTATGAC 197
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 AACTCCTTTTGCTTGCTTCGATTTGTTTC-GGTGCTCTCATGTGCAAAATCGTTTATGAC 119
Query 198 TTGACTCGTTTCATAAGTCCATTGCTCTTCAGTGTTTATGGAAAACTTGACAGCAAAGTT 257
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 120 TTGACTCGTTTCATAAGTCCATTGTTCTTCAGTGTTTATGGAAAACTCAACAGCAAAGTT 179
Query 258 -AGAATGGAATGGAACAATAGGGGATTCTCAACTTTTCATGCTGTGTTTACTTCTGTGGC 316
| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 CA-AATGGAATGGAACAATAGGGGATTCTCAACTTTCCATGCTGTTTTTACTTCTGTGGC 238
Query 317 TTCAATTTACTTCTTGGTGATATCTGATCAATTTGATGAGAATGTTCATGGTGATTCAGT 376
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 239 TTCAATTTACTTCTTGGTGATATCTGATCAATTTGATGAGAATGTTCATGGCGATTCGGT 298
Query 377 CATTAATAGTACAACGAGGTTATCGGAATCTGTAATGGGGATCTCCTTAGGCTATTTTCT 436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TATCAATAGTACAACGAGGTTATCGGAATCTGTAATGGGGATCTCCTTAGGCTATTTTAT 358
Query 437 AGCAGACTTAGCAATGATCTTTTGGTATTTTCCTACTCTTGGTGGTATTGAATATGTTTT 496
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 AGCAGATTTAGCAATGATCTTTTGGCATTTTCCTACTCTTGGTGGTATTGAATATGTTTT 418
Query 497 TCATCACTTCTTATCGATGTTTGCCATCATTCTTTCTGTCACAAGTGGGCAAAGTCAGTT 556
||||||| || ||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 419 TCATCACCTCATATCGATGTTTGCGATCTTTCTGTCTGTCACAAGTGGGCAAAGTCAGTT 478
Query 557 CTACATCTTCTTAGTTCTCTTATCAGAGGCTACAACCCCGTTTGTTAATCTACGGTGGTA 616
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CTATATCTTCTTAGTTCTCTTATCAGAGGCCACAACCCCGTTTGTTAATCTACGGTGGTA 538
Query 617 CTTGGATAATAGTGGTCAAAAAGGCTCAAAGGCTTACACGCTCAACGGAATTGCTTTGTT 676
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 539 CTTGGATAATAGTGGTCAAAAAGGCTCCAAGGCTTACACGCTGAACGGGATTGCCCTGTT 598
Query 677 CTTGGGGTGGCTGGTTGCGAGGGTCCTTTTGTTTATCTTCTTCTTTGTTCACATGTACCT 736
|||||| ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 599 CTTGGGTTGGCTGGTTGCGAGGATCCTTTTGTTTATCTACTTCTTTGTCCACATGTACCT 658
Query 737 CCATTTCCATCAGGTGAAGCAAGTGTTTCCACTGGGATTTTACAGCCTTCTTACGATA-C 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 659 CCATTTCCATCAGGTGAAGCAAGTGTTTCCACTGGGATTTTACAGCCTTCTTAC-ATTGC 717
Query 796 CACCGGCTCTAGCAGTGATGAATCTCCTTTGGTTCTGGAAAATCACCAAAGGATTGATCA 855
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 CACCGGCTCTAGCAGTGATGAATCTCCTTTGGTTTTGGAAAATCACCAAAGGATTGATCA 777
Query 856 AAACACTCTCCAAGGCGAAAACATCGGGGATGAAGAAACAGTGATGGTTACCCTGAAAAA 915
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 778 AAACACTCTCCAAGGCGAAAACATCGGGAATGAAGAAACAGTGATGCTTGCCCTGGAAAA 837
Query 916 GATTTT 921
||||||
Sbjct 838 GATTTT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5