BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10380.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942850 jgi|Araly1|942850|scaffold_603394.1 1500 0.0
> Ahg942850 jgi|Araly1|942850|scaffold_603394.1
Length=955
Score = 1500 bits (812), Expect = 0.0
Identities = 906/953 (95%), Gaps = 0/953 (0%)
Strand=Plus/Plus
Query 295 aaaaaaaaaaCGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTGCGGTAATGGTGATG 354
|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 3 AAAAAATAAACGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTTCGGTTGTGGTGATG 62
Query 355 GCTCCTCCAACGCCGGGGACACCGGGAACACCGGGAGGACCGTTGATCACGGGGATGAGA 414
|||||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 63 GCTCCTCCTACCCCGGGAACGCCGGGAACACCGGGAGGGCCGTTGATCACGGGAATGAGA 122
Query 415 GTGGATTCAATGTCGTTTGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 474
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTGGATTCAATGTCATTCGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 182
Query 475 ATGGGATCAACTTGGGGTCAACATGACACATGCTTCACCGATTTTCCCTCTCCTGATGTC 534
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 183 ATGGGATCAACTTGGGGTCAACATGACACATGTTTCACCGATTTTCCCTCTCCTGATGTC 242
Query 535 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 302
Query 595 ACAGCCGGTCCAATCGTGAACCAGAAATACGATGGAGCAGAAACCCTAATCGGTAACGCT 654
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 ACAGCCGGTCCAATCGTGAACCAGAAATACGACGGAGCAGAAACCCTAATCGGTAACGCG 362
Query 655 GCATGCGCAGGACTCGCAGTGATGATCATAATACTCTCAACAGGTCATATCTCAGGGGCT 714
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 363 GCATGCGCAGGACTCGCAGTGATGATCATAATACTATCAACGGGTCACATCTCAGGGGCT 422
Query 715 CACCTAAACCCATCACTGACCATAGCATTCGCTGCTCTAAGGCACTTCCCTTGGGCACAC 774
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 423 CATCTAAACCCATCACTGACCATAGCATTCGCAGCTCTAAGGCACTTCCCTTGGGCTCAC 482
Query 775 GTCCCTGCTTACATAGCGGCTCAAGTCTCAGCTTCCATTTGCGCTTCATTCGCACTTAAA 834
|| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 483 GTGCCTGCTTACATTGCAGCTCAAGTCTCAGCTTCCATTTGTGCTTCATTCGCACTTAAA 542
Query 835 GGAGTGTTCCATCCTTTTATGTCCGGTGGTGTCACTATTCCATCTGTTAGCCTTGGACAA 894
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 543 GGAGTGTTCCATCCTTTTATGTCCGGAGGTGTCACTGTTCCATCTGTTAGCCTCGGACAA 602
Query 895 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTTGTAACTGCCGTCGCT 954
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 603 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTCGTCACTGCCGTCGCC 662
Query 955 ACCGACACTCGTGCCGTTGGAGAATTGGCAGGTATAGCCGTTGGAGCCACGGTCATGCTC 1014
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 663 ACCGACACTCGTGCCGTTGGAGAATTAGCAGGTATAGCTGTTGGAGCCACGGTCATGCTC 722
Query 1015 AATATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCTGTGAGAACTCTAGGA 1074
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 723 AACATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCCGTGAGGACTCTAGGA 782
Query 1075 CCAGCCGTTGCATCAGGAAACTATAGGTCACTATGGGTGTATCTGGTGGCTCCTACACTT 1134
||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||
Sbjct 783 CCAGCCGTTGCATCAGGAAACTATAGGGCAGTTTGGGTTTATCTGGTGGCTCCTACACTT 842
Query 1135 GGTGCCATATCTGGTGCAGCGGTCTACACAGGTGTTAAGCTTAACGATAGCGTGACTGAC 1194
||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| ||| |||
Sbjct 843 GGTGCAATATCCGGTGCAGCCGTCTACACAGGTGTTAAACTTAACGATAGCGAGACCGAC 902
Query 1195 CCGCCTCGTCCGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 1247
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CCGCCTCGTCAGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5