BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10390.1
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489882 jgi|Araly1|489882|fgenesh2_kg.6__3016__AT4G10390.1 1805 0.0
Ahg313871 jgi|Araly1|313871|fgenesh1_pm.C_scaffold_1002651 706 0.0
> Ahg489882 jgi|Araly1|489882|fgenesh2_kg.6__3016__AT4G10390.1
Length=1547
Score = 1805 bits (977), Expect = 0.0
Identities = 1266/1400 (90%), Gaps = 42/1400 (3%)
Strand=Plus/Plus
Query 208 AATCAAATAAAGACTCAAtc-tt-tc--tt-tg--c--tt-tgctctgttctgctctgtt 257
||||||| |||||||||||| || || || || | || ||||||||||||||||| |
Sbjct 162 AATCAAAGAAAGACTCAATCTTTCTCTGTTCTGCTCTGTTCTGCTCTGTTCTGCTCTG-T 220
Query 258 tttgctctgtttttataatggcttgtttcttgAATTGTGTTAGATTTGATGTCTCCAAGA 317
||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 221 TTTGCTCTG-TTTTGCAATGGCTTGTTTCTTAAATTGTGTTAGATACGATGTCTCCAAGA 279
Query 318 CGATCACCGACAAACCCACAAGTCAAGGATCTGGTGTGACTTGTTATAACAGCTGGGATG 377
| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 280 CAATCACCGACAAACCCACAAGTAAAGGATCTGGTGTGACTTGTTACAGTAGCTGGGATG 339
Query 378 ATGTTGAAACTCTCACTTCCAATTTCTCTAGATTGATTGGTTCTGGTGGCTATAGCAGTA 437
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 340 ATGTGGAAACTCTTACTTCCAATTTCTCTAGATTGATTGGTTCTGGTGGCTATAGTAGTA 399
Query 438 TCTACATGGCTCGCTTCTCTGGCTCTGATAAAGCGGCTCTCAAGGTTCATGTTAGTAGTC 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 400 TCTACATGGCTCGCTTCTCTGGCTCTGATAAAGCGGCTCTCAAGGTTCATGTTAGTAGCC 459
Query 498 ACCGTCTTTATCAAGTCTTTAGACTTGAGCTTGATATTTTGCTTCGTCTTCAACATCCTA 557
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 460 ACCGTCTTTATCAGGTCTTTAGACTTGAACTTGATATTTTGCTCCGTCTTCAACATCCTA 519
Query 558 ACATTGTCAAGCTTCTTGGCTATTTCGATGATTCAGAGGAAAATGGTGCTCTTCTTCTTG 617
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ACATTGTGAAGCTTCTCGGCTATTTCGATGATTCAGAGGAAAATGGTGCTCTTCTTCTTG 579
Query 618 AGTATCTTCCTCAAGGAAATCTACAAGAGAAGCTCCAAAGCAATAGCAAGCAAGTCTTGC 677
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AATATCTTCCTCAAGGAAATCTACAAGAGAAGCTCCAAAGCAATAGCAAGCAAGTCTTGC 639
Query 678 AATGGAGGAACCGTGTAGCGATTGCGTTACAGTTAGTTCAAGCTATTGAACATATTCATG 737
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 640 AATGGAGGAACCGTGTAGCGATTGCGTTACAGTTAGTTCAAGCTATTGAACACATTCACG 699
Query 738 AGAAATGTAGCCCGCAGATAGTGCACGGGGACATCAAATCTTCCAACGTTCTTCTAGACA 797
||||||||| ||||||||| |||||||||||||| ||| ||||||| || || ||||| |
Sbjct 700 AGAAATGTACCCCGCAGATCGTGCACGGGGACATAAAAGCTTCCAATGTACTCCTAGATA 759
Query 798 AAAACTTTGATTGCAAGCTTTGCGATTTCGGGTCAGCTAAAGTCGGGTTCTCTTCGATGG 857
|||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 760 AAAACTTTAATTGTAAGCTATGCGATTTCGGGTCAGCTAAAGTTGGATTCTCTTCGATGG 819
Query 858 TTCAGCCTCCTACGATGTCGCCTAGATCTAGACAAGTGAAGA-TGGTGGGATCTCCAGGT 916
|||||||||| ||||||||||||||||| |||||||||| || |||||||||| || |||
Sbjct 820 TTCAGCCTCCCACGATGTCGCCTAGATCCAGACAAGTGA-GAATGGTGGGATCACCGGGT 878
Query 917 TACACAGACCCTCATTATTTAAGAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGG 976
|| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 879 TATACAGACCCTCACTACTTAAAAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGG 938
Query 977 TTTGGAGTTGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGT 1036
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TTTGGTGTCGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGC 998
Query 1037 GAGATGCTGGTGCATATAGCTGCTCCACTTATGAATGAGATTTTGGATTCGAGTGTAGAC 1096
|||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 999 GAGATGTTGGTGCATACAGCTGTTCCACTTATGAATGAGATTTTGGATTCAAGTGTAGAC 1058
Query 1097 ATTTCAGAGGACAAGGTCAGACAGTTCTTGGACCCGAGGTTGTTAAGGGATAGTCTTGAT 1156
|| |||| |||| || ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1059 ATAGCAGAAAACAAAGTGAGACAGTTCTTGGACCCGAGGTTGTTAAGTAACAGTCTTGAT 1118
Query 1157 ATCGATGAGGTCAAGACAATGTTGAGTGTTGCTGCGGTCTGTATCAGTAGCAAGCTATCT 1216
|| |||||||| ||||||||| ||| | |||||||| | |||||||||||||| ||||||
Sbjct 1119 ATTGATGAGGTAAAGACAATGCTGAATATTGCTGCGCTTTGTATCAGTAGCAAACTATCT 1178
Query 1217 CTAAGACCTTCGGCTGCTCAAGTAGCGGATACTCTTATAAAGGAAATACCATCATTGAGT 1276
||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 1179 CTAAGACCTTCCGCTGCTCAAGTAGCGGAAACTCTAATAAAGGAAATCCCATCTTTGAGT 1238
Query 1277 TTCCTCGGTTGCGGTAAAGGAGTGTGAGTTATCGGTG--TCGATGGTTTTTGTTGTAGTG 1334
||||||||||| |||||||||||||||||||| || | || | |||||| ||||||| |
Sbjct 1239 TTCCTCGGTTGTGGTAAAGGAGTGTGAGTTATGGG-GCATCCACGGTTTTCGTTGTAGCG 1297
Query 1335 TGGTAAGGCT-GCGTGAACGACACTGTAAAGTTGGTGTGCATTTAGGAGTTTCTTGGAAA 1393
||||| || | |||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1298 TGGTA-GGATTGCGTGAACGAGACTGTGAAGTTGGTGTGCATTTAGGAGTTCCTTGGAAA 1356
Query 1394 ACCAGCAAGAAG-AATAACCATGTAAATACTCTTGTTTT-GTTTTGTGAATAGAAGCAGG 1451
|||||||||||| || ||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1357 ACCAGCAAGAAGGAAAAACCATGTAAATACTCT-GTTTTTGTTTTGTGAATAGCAGCAGG 1415
Query 1452 AAATAACATTTTGTCTAATTATCATTCATCAACATTTCCTAGGAAATGTA------AT-- 1503
|| |||||||||||||||||| | || | ||||||||||||||||| ||
Sbjct 1416 AA-TAACATTTTGTCTAATTA--A--CA--A-CATTTCCTAGGAAATGTGTTTTTGATCC 1467
Query 1504 -TT-T--GATTGTTGTTTTGTCTTGAAATCTTAGAGAGAAAGAGAAGTTCTGTTCATGTC 1559
|| | |||||||||||||||| |||||||| ||||||||||||| |||| ||||||||
Sbjct 1468 GTTGTTTGATTGTTGTTTTGTCTAGAAATCTTTGAGAGAAAGAGAACTTCTCTTCATGTC 1527
Query 1560 AATGTAATGTAAAGTAAAGC 1579
|||||||||||||| ||||
Sbjct 1528 CATGTAATGTAAAGTCAAGC 1547
Score = 235 bits (127), Expect = 7e-61
Identities = 156/169 (92%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 1 GGCAGCTTTATTATTAAATAATCGGTCAAACTCTGCCTCCCAATCCAAAGTCTAAAACC- 59
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 GGCAGCTTTATTAATAAATAATCAGTCAAACTCTGCCTCCCAATCCAAAGTCT-AAACCT 59
Query 60 TTTCCTTCTTCTTTCTTTACAAATCCAACAAT--CTCAATGTCTCCAAATCCATAACTTT 117
||||||||||| ||| ||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 60 TTTCCTTCTTCCTTCATTACAAATCTAACAATCACTCATTGTCTCCAAATCCATAACTTT 119
Query 118 CTTCGATCCCCTTGTTCTTCCTCTGTCTGCTGTTACATTTTTTA-CAAA 165
|||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 120 CTTCGATCCCCTTGTTCTTCCTCTGTCTGCAGTTACATTTTTAATCAAA 168
> Ahg313871 jgi|Araly1|313871|fgenesh1_pm.C_scaffold_1002651
Length=1578
Score = 706 bits (382), Expect = 0.0
Identities = 780/966 (81%), Gaps = 52/966 (5%)
Strand=Plus/Plus
Query 350 GGTGTGACTTGTTATAACAGCTGGGATGATGTTGAAACTCTCACTTCCAATTTCTCTAGA 409
||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 82 GGTGTTACTTGTTAT-AC--TTGGGATGATGTTGAGTCTCTCACTTCCAATTTCTCTAGA 138
Query 410 -TTGATTGGTTCTGGTGGCTATAGCAGTATCTACATGGCTCGCTTCTCTGGCTCTGAT-A 467
|| |||||| ||||||| || || ||||||||| ||||||| || ||||||||| || |
Sbjct 139 CTT-ATTGGTACTGGTGGATACAGTAGTATCTACTTGGCTCGTTTGTCTGGCTCT-ATCA 196
Query 468 AAGCGGCTCTCAAGGTTCATGTTAGTAGTCACCGTCTTTATCAAGTCTTTA-GACTTGAG 526
| || ||||||||||||||||| |||||||| ||||||||| |||| |||| | | ||||
Sbjct 197 ACGCTGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTATAAAGTGTTTAGGTC-TGAG 255
Query 527 CTTGATATTTTGCTTCGTCTTCAACATCCTAACATTGTCAAGCTTCTTGGCTA-TTTCGA 585
||||| |||||||||||||||||||||||| ||||||| ||||||||||| || ||| ||
Sbjct 256 CTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAGCTTCTTGGTTACTTT-GA 314
Query 586 TGATTCAGAGGAAAATGGTGCTCTTCTT-CTTGAGTATCTTCCTCAAGGAAATCTACAAG 644
||||||||||||| |||||| | | || || || || ||||||||||| || || ||||
Sbjct 315 CGATTCAGAGGAAAGTGGTGCAC-TATTACTAGAATACCTTCCTCAAGGTAACCTTCAAG 373
Query 645 AGAAGCTCCAA-AGCAATAGCAAGCAAGTCTTGCAATGGAGGAACCGTGTAGCGATTGCG 703
||||||| || |||||||||| ||||| || | |||||| |||||| || || |||
Sbjct 374 AGAAGCT-TAACCGCAATAGCAAACAAGTGTTACCATGGAGAAACCGTACCGCTATAGCG 432
Query 704 TTACA-GTTAGTTCAAGCTATTGAACATATTCATGAGAAATGTAGCCCGCAGATAGTGCA 762
|| || ||| | ||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 433 TTTCAGGTT-GCGCAAGCGATTGAACATATTCATGAGAAATGTAGTCCTCAGATTGTGCA 491
Query 763 CGGGGACATCAAATCTTCCAACGTTCTTCTAGACAAAAACTTT-GATTGCAAGCTTTGCG 821
||| |||||||||||||||||| | ||||| |||||| | ||| | | ||||||||| |
Sbjct 492 CGGTGACATCAAATCTTCCAACATACTTCTTGACAAACA-TTTCAACTCCAAGCTTTGTG 550
Query 822 ATTTCGGGTCAGCTAAAGTCGGGTTCTCTTCGATGGTTCAGCCTCCT---ACGATGT--- 875
|||| || |||||||| ||||||||||| || |||||||||||| || |||| ||
Sbjct 551 ATTTTGGATCAGCTAAGGTCGGGTTCTCGTCTATGGTTCAGCCTTCTAAGACGACGTCAA 610
Query 876 C---G-C-CTA-GATCT-AGACAAGTGAAGATGGTGGGATCTCCAGGTTACACAGACCCT 928
| | | | | ||||| || ||||||| |||| | || |||||||| ||||| || |||
Sbjct 611 CTATGTCACCACGATCTAAG-CAAGTGATGATGATTGGTTCTCCAGGGTACACTGATCCT 669
Query 929 CATTATTTAAGAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGTTGTG 988
|| || || ||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 670 CACTACTTGAGAACAGGTATTGCTTCCAAGAAGATGGATATGTATGGGTTTGGAGTGGTG 729
Query 989 GTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTT-CTGCTGAGAGAGGTGAGATGCTGGT 1047
||||||||||||||||| || ||||||||| || | ||||||||||| |||||||||||
Sbjct 730 GTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGC-GCTGAGAGAGGCGAGATGCTGGT 788
Query 1048 GCATATAGCTGCTCCACTT-ATGAATGAGATT-TTGGATTCGAGTGTAGACATTTCAGAG 1105
|||| | | ||||| || || | || ||| ||| |||||| || ||| || ||||
Sbjct 789 ACATACATCAGCTCCG-TTGATCCACGATATTCTTG-ATTCGAATGGAGATATCGCAGAA 846
Query 1106 GACAAGGTC-AGACAGTTCTTGGACCCGAGGTTGTTAAGGGA---TAGTCTTGATATCGA 1161
|| || | | |||||||||||||| || ||||||| ||||| |||||||||||| ||
Sbjct 847 GAGAAAG-CGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGACAGTAGTCTTGATATAGA 905
Query 1162 TGAGGTCAAGACAATGTTGAG-TGTTGCTGCGGTCTGTAT-CAGTAGCAAGCTATCTCTA 1219
||||| ||||||||| | || ||| ||||| ||||| | | | ||| | ||| ||
Sbjct 906 AGAGGTTAAGACAATGCT-AGGTGTGGCTGCTTTCTGTCTTC-GCAGCCCTCCATCGCTG 963
Query 1220 AGACCTTCGGCTGCTCAAGTAG-CGGATACTCTTATAAAGGAA-ATACCATCATTGAGTT 1277
||||| |||||| ||||||||| | | |||||||| ||| || || || || || ||
Sbjct 964 AGACCCTCGGCTTCTCAAGTAGTCCAA-ACTCTTATCAAG-AAGATCCCGTCGCTGTCTT 1021
Query 1278 TCCTCG 1283
||||||
Sbjct 1022 TCCTCG 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5