BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10430.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942853 jgi|Araly1|942853|scaffold_603397.1 1772 0.0
Ahg473496 jgi|Araly1|473496|fgenesh2_kg.1__3450__AT1G33230.1 992 0.0
Ahg895176 jgi|Araly1|895176|Al_scaffold_0006_3172 848 0.0
> Ahg942853 jgi|Araly1|942853|scaffold_603397.1
Length=1084
Score = 1772 bits (959), Expect = 0.0
Identities = 1044/1086 (96%), Gaps = 2/1086 (0%)
Strand=Plus/Plus
Query 74 TTCGCAATCATCAACCATCAATGGAAGTTGAAGAAGAAGTTAAACAAATCATAGATGAGG 133
||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 TTCGCAATCATCAACCATCGATGGAAGTCGAAGAAGAAGTTAAACGAATCATAGATGAGG 60
Query 134 TCAAAGAGCTTCATGACTCCGCCGCTTCTTTCATCTCATCTTCTTCTCAACAAGAGCTCT 193
| || || |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 61 TTAAGGACCTTCATGACTCCGCCGCTTCATTCATCTCATCATCTTCTCAACAAGAGCTCT 120
Query 194 CTCTCCGTCAAAAAGCCTCCGCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTATCG 253
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTCTCCGTCTAAAAGCCTCCTCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTCTCG 180
Query 254 TCTCCAACAAAAATCTCGATCCTAAGCTCGTCGAAAAGCTTGAGGAAGATCTGCATCGTG 313
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 181 TCTCCAACAAAAATCTCGATCCTAAACTCGTCGAGAAGCTTGAAGAGGATCTGCATCGTG 240
Query 314 CTAGATGCATGCTTGTTGACGGAGAAACATCTTCATTTCTCCCATCCAAACCACAAGGAC 373
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 241 CTAGATGCATGCTTGTTGATGGAGAAACATCTTCATTTCTACCATCAAAACCTCAAGGAC 300
Query 374 GCTTTGTGAGAATGTTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGC 433
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTTTGTGAGAATGTTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGC 360
Query 434 TTAAAGTTAAAGAAGAATACAATCGTTACAGAGACAAGACTGCTCTTCtttttctttttt 493
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TTAAAGTTAAAGAAGAATACAATCGTTACAGAGATAAGACTGCTCTTCTTTTTCTTTTTT 420
Query 494 tCCCTGCCACACTTTTAATCCTTAGGTCTTATTATTGGGGTGGATGTTTGCCTGCGTTTC 553
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TCCCTGCAACACTTTTAATCCTTAGATCTTATTATTGGGGTGGATGTTTGCCTGCGTTTC 480
Query 554 CTGTCCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGA 613
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGA 540
Query 614 ATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTG 673
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACATATTAAGAGCTAACGGGAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTG 600
Query 674 CCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCC 660
Query 734 AGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGC 793
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 661 AGAAACAGAGAGGAGTCCATCTTTTCCTGCAATGGGCTATGATGCAAGGCGTTGCCATGC 720
Query 794 TTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTA 853
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTA 780
Query 854 AGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTAT 913
||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 781 AGAGAATGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGTTAT 840
Query 914 GTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTAAGAA 973
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTCCCATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTAAGAA 900
Query 974 AAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGGATTCTTCTGGTAG 1033
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 AAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGCATTCTTCTGGTAG 960
Query 1034 TGATGGCAGTTGGGAACTTCATAAATACAGTAGAGACACTGATGGCAAAGTCAAGAGTTA 1093
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 TGATGGCTGTTGGGAACTTCATAAACACAGTAGAGACACTGATGGCAAAGTCAAGAGTTA 1020
Query 1094 AGGCAAAGATGAAGAGAAGTAAAAGCAGAGCAGAGCTTAATTAGACTTCACAGGTCTCTC 1153
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGGCAAAGATGATGAGGAGTAAAAGCAGAGCAGAGCTTAATTAGACTTCACAGGTCTC-- 1078
Query 1154 ATCTGT 1159
||||||
Sbjct 1079 ATCTGT 1084
> Ahg473496 jgi|Araly1|473496|fgenesh2_kg.1__3450__AT1G33230.1
Length=1527
Score = 992 bits (537), Expect = 0.0
Identities = 914/1095 (83%), Gaps = 29/1095 (3%)
Strand=Plus/Plus
Query 62 TCCGATCTCGTCTTCGCAAT-CATCAACCAT-CAATGGAAGTTGAAGAAGAAGTTAAACA 119
||||||||| || || | || || |||||| || || |||||||||||||| ||||
Sbjct 181 TCCGATCTCATC-TCCCGATCCAAAAACCATGGAA--GAGGTTGAAGAAGAAGTAAAACG 237
Query 120 AATCATAGATGAGGTCAAAGAGCTTCATGACTCCGCCGCTTCTTTCATCTCATCTTCTTC 179
|||| | || | || ||||||||||| ||||| || | || ||| | || ||||||||
Sbjct 238 AATCGTCGAACAAGTTAAAGAGCTTCACGACTCTTCCACATCATTCGTTTCTTCTTCTTC 297
Query 180 TCAACAAGAGCTCTCTCTCCGTCAA-AAAGCCTCCGCCGTTGATTCCTCTATCCGTCGTC 238
|||| ||||||||||||||||| || | |||||||| |||||| || || ||||||||||
Sbjct 298 TCAAGAAGAGCTCTCTCTCCGT-AACAGAGCCTCCGTCGTTGACTCATCAATCCGTCGTC 356
Query 239 TCCACTCTACTATCGTCTCCAACAAAAATCTCGATCCTAAGCTCGTCGAAAAGCTTGAGG 298
| || |||||| | | |||| ||||| |||||||||| ||||| ||||||||||||| |
Sbjct 357 TTCATTCTACTCTTGCCTCCGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTTGAAG 416
Query 299 AAGATCTGCATCGTGCTAGATGCATGCTTGTTGACGGAGAAACATCTTCATTTC-TCCCA 357
| ||||| || || |||| ||||||||||| || || || || || || |||| ||||
Sbjct 417 AGGATCTACAACGAGCTAAATGCATGCTTGCAGATGGTGACACTTCATCGTTTCTTCCC- 475
Query 358 TCCAAACCACAAGGACGCTTTGTGAGAATGTTTTGT-GGACCTGTGAATGTTCGAGCTTT 416
|| ||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 476 TCTAAACCTCAAGGACGTTTTGTGAGAATGTTTT-TAGGACCTGTGAATGTTCGAGCTTC 534
Query 417 GCGTAAAGATGTTCAGCTTAAAGTTAAAGAAGAATACAATCGTTACAGAGACAAG-ACTG 475
|| |||||| | ||||||||||||||||||||||||||| | |||||||| || || |
Sbjct 535 ACGGAAAGATATACAGCTTAAAGTTAAAGAAGAATACAATAGCTACAGAGA-TAGAACAG 593
Query 476 CTCTTCtttttctttttttCCCTGCCACACTTTTAATC-CTTAGGTCTTATTAT-TGGGG 533
|||||||||||||| |||||||||| | |||||| | | || || ||||| | | ||||
Sbjct 594 CTCTTCTTTTTCTTGTTTTCCCTGCAATACTTTTGA-CACTAAGATCTTA-TGTGTGGGA 651
Query 534 TGGATGTTTGCCTGCGTTTCCTGTCCAGCTCTATGAGGCTTGGCTGT-TGTTTCTCTATG 592
||||||||||||||| || ||||| |||||||| |||||||||| | |||| || ||||
Sbjct 652 TGGATGTTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCT-TCTGTTCCTTTATG 710
Query 593 CTGGGTTGGCTATGCGTGAGAATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGT 652
|||| |||| |||||| ||||| || || ||||| || || || ||||| ||| ||||||
Sbjct 711 CTGGTTTGGTTATGCGAGAGAACATTTTGAGAGCCAATGGGAGTGATATCCGTTCATGGT 770
Query 653 GGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCA 712
|| | ||||| ||||||| ||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 771 GGATTTATCACCATTATTTTGCCATGGCTATGTCCCTTGTTAGTCTCACTTGGGAAATCA 830
Query 713 AAGGTCAACCAAACTGTGTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTA 772
||||||||||||||||||| ||||| |||| |||||| | ||||||||| ||||||||||
Sbjct 831 AAGGTCAACCAAACTGTGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTA 890
Query 773 TGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTC 832
||||||||||||| || |||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 891 TGATGCAAGGTGTTGCGATGCTTCTACAAAATAGATATCAGCGCCAAAGATTATACACTC 950
Query 833 GCATTGCACTAGGAAAGGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTG 892
| |||||||||||||||||||| || ||||| || || |||||||||||||||||||| |
Sbjct 951 GTATTGCACTAGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAG 1010
Query 893 ATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGGTG-TTTGAAGCATAC 951
|||| ||||||| ||| |||| |||||| |||||| |||||||| | ||||||||||||
Sbjct 1011 ATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGG-GCTTTGAAGCATAC 1069
Query 952 GTTGGACTGCTGTTGCTAAGAAAAACAGTA-ACTGGAGTTGTTAATGAATGGCAGGTGAT 1010
|| ||||||| |||||| || | | || || || || || |||||||||||| ||
Sbjct 1070 GTGGGACTGCAGTTGCTTAGGACAGT-GTTGACGGGTGTAGTCGCTGAATGGCAGGT-AT 1127
Query 1011 -GGTTTGTGGGATTCTTCTGGTAGTGATGGC-AGTTGGGAACTTCATAAATACAGTAGAG 1068
||||||||| ||||||||||| |||||||| | |||| ||||||||||| |||||||||
Sbjct 1128 TGGTTTGTGGTATTCTTCTGGTTGTGATGGCCA-TTGGAAACTTCATAAACACAGTAGAG 1186
Query 1069 ACACTGATGGCAAAGTCAAGAGTT-AAGGCAAAGATGAAGAGAAGTAAAAGCAGAGCAGA 1127
||| |||||| ||||| ||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1187 ACATTGATGGTGAAGTCGAGA-TTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGA 1245
Query 1128 GCTTAATTAGACTTC 1142
||| |||| |||||
Sbjct 1246 ACTTGATTAAACTTC 1260
> Ahg895176 jgi|Araly1|895176|Al_scaffold_0006_3172
Length=684
Score = 848 bits (459), Expect = 0.0
Identities = 492/508 (97%), Gaps = 1/508 (0%)
Strand=Plus/Plus
Query 550 TTTCCTGTCCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT 609
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTCCTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT 237
Query 610 GAGAATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGTGGCTATATCATCATTAT 669
||||| ||| |||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 238 GAGAACATACTAAGAGCTAATGGGAGCGATATTCGTCCATGGTGGCTATATCATCACTAT 297
Query 670 TGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGT 357
Query 730 GTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCC 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCC 417
Query 790 ATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG 849
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGCTTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG 477
Query 850 GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTG 909
||||||||| ||||||| || ||||||||||||||||| |||||||||||| ||||||||
Sbjct 478 GCTAAGAGACTGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTG 537
Query 910 TTATGTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTA 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTATGTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTA 597
Query 970 AGAAAAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGGATTCTTCTG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 AGAAAAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGTATTCTTCTG 657
Query 1030 GTAGTGATGGCAGTTGGGAACTTCATAA 1057
||||||||||| ||||||| ||||||||
Sbjct 658 GTAGTGATGGCTGTTGGGA-CTTCATAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5