BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10450.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942855 jgi|Araly1|942855|scaffold_603399.1 987 0.0
> Ahg942855 jgi|Araly1|942855|scaffold_603399.1
Length=625
Score = 987 bits (534), Expect = 0.0
Identities = 581/604 (96%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 84 AAAATGAAGACCATTTTGTCCTCGGAGACTATGGACATCCCCGACGGCGTCGCCATTAAG 143
|||||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||
Sbjct 18 AAAATGAAGACCATTTTGTCATCTGAGACGATGGACATTCCCGACGGCGTGGCCATTAAG 77
Query 144 GTAAACGCCAAGGTGATTGAGGTCGAAGGTCCACGAGGTAAACTCACTCGTGACTTCAAG 203
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 78 GTAAACGCCAAGGTCATTGAAGTGGAAGGTCCACGAGGTAAACTCACTCGTGACTTCAAG 137
Query 204 CATCTGAATCTCGATTTCCAGTTGATTAAAGACCAAGTCACTGGAAAACGTCAGCTTAAG 263
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 138 CATCTCAATCTCGATTTCCAGTTGATTAAAGACGAAGTCACTGGAAAACGTCAGCTTAAG 197
Query 264 ATTGATTCTTGGTTTGGTTCTCGTAAGACAAGTGCTTCGATTAGAACTGCTTTAAGCCAT 323
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 198 ATTGATTCTTGGTTTGGTTCTCGTAAGACAAGTGCTTCTATTAGAACTGCTTTAAGCCAT 257
Query 324 GTTGATAATCTCATTGCTGGTGTTACTCAAGGTTTTCTTTATAGAATGAGATTTGTGTAT 383
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 258 GTTGATAATCTCATTGCTGGTGTTACTCAAGGTTTTCTTTATAAAATGAGGTTTGTGTAT 317
Query 384 GCTCATTTTCCTATCAATGCTTCTATTGATGGTAACAATAAGAGTATTGAGATTCGTAAC 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GCTCATTTTCCTATCAATGCTTCTATTGATGGTAACAATAAGAGTATTGAGATTCGTAAC 377
Query 444 TTCCTTGGTGAGAAGAAGGTGAGGAAGGTTGAGATGTTGGATGGTGTTAAGATTGTTCGA 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTCCTTGGTGAGAAGAAGGTGAGGAAGGTTGAGATGTTGGATGGTGTTAAGATTGTTCGG 437
Query 504 TCTGAGAAGGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAGCTT-GTTTCACG 562
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 438 TCTGAGAAGGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAG-TTAGTGTCACG 496
Query 563 GTCTTGTGCTTTGATCAATCAGAAATGTCATGTGAAGAAGAAGGATATCAGGAAGTTTCT 622
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 GTCTTGTGCTTTGATCAATCAGAAATGTCATGTGAAGAAGAAGGATATTAGGAAGTTTCT 556
Query 623 TGATGGTATCTATGTGAGCGAGAAAGGCAAGATCGCAGTCGAGGAATGAAGTTCGCTATT 682
||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||||||
Sbjct 557 TGATGGTATCTATGTGAGCGAGAAAGGGAAGATCGCTGTTGAGGAATGAAGTTTGCTATT 616
Query 683 GAAA 686
|||
Sbjct 617 CAAA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5