BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10457.1
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327213 jgi|Araly1|327213|fgenesh1_pm.C_scaffold_6002433 422 8e-118
Ahg942856 jgi|Araly1|942856|scaffold_603400.1 289 9e-78
> Ahg327213 jgi|Araly1|327213|fgenesh1_pm.C_scaffold_6002433
Length=279
Score = 422 bits (228), Expect = 8e-118
Identities = 262/279 (94%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 1 ATGAAATATGGAGTTTTGTTTATGGTTTCTTGTGGTGTCATGTTTCTAATTCTAAGCCAT 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAATATGGGGTTTTGTTTATGGTTTCTTGTGGTGTCATGTTTCTTATTCTAAGCCAT 60
Query 61 GTTGAAGAGGTTGAAGCCATGAAGAAGTTTGGGTGCAACACTACACACCCTTTTCCTGGA 120
|||||||| | ||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 61 GTTGAAGAAGCTGACGCCATGAAAAAGTTTGGGTGCAACACTACACACCCATTCCCTGGA 120
Query 121 AAATGTGGAAATAATGGAAAGAGTTCTTGGGTAAGTGACATGAAAAAGCTTCCAAGCGCA 180
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 AAATGCGGAAATAATGGAAAGAGTTCTTGCGTAAGTGACATGAAAAAGCTTCCTAGCGCG 180
Query 181 CCAAAAAATCGTGATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAGCTAGGGGTATG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CCAAAAAATCGTAATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAGCTTGGGGTATG 240
Query 241 CCTGGCGAGCGTGTATGTAGATGTGATTATGATTGTTAA 279
|||||||||||||||||||||||| | ||||| ||||||
Sbjct 241 CCTGGCGAGCGTGTATGTAGATGTCAATATGACTGTTAA 279
> Ahg942856 jgi|Araly1|942856|scaffold_603400.1
Length=320
Score = 289 bits (156), Expect = 9e-78
Identities = 241/282 (85%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 1 ATGAAATATGGAGTTTTGTTTATGGTT-TCTTGTGGTGTCATGTTTCTAATTCTAAGCCA 59
||||||||||| |||||| |||| || ||||| | |||| ||||| ||||||||||
Sbjct 22 ATGAAATATGGTGTTTTGCTTAT-ATTACCTTGTATTCTCATTTTTCTTGTTCTAAGCCA 80
Query 60 TGTTGAAGAGGTTGAAGCCATGAAGAAGTTTGGGTGCAACACTACACACCCTTTTCCTGG 119
|||||||||||| ||||||||||| || ||||||||||||||||||||||| || |||||
Sbjct 81 TGTTGAAGAGGTGGAAGCCATGAAAAAATTTGGGTGCAACACTACACACCCATTCCCTGG 140
Query 120 AAAATGTGGAAATAATGGAAAGAGTTCTTGGGTAAGTGACATGAAAAAGCTTCCAAGCGC 179
|||||||||||||||||||| |||| | || ||||| || |||||||| ||||| | ||
Sbjct 141 AAAATGTGGAAATAATGGAAGGAGTACATGTGTAAGCGATATGAAAAAAATTCCAGGTGC 200
Query 180 ACCAAAAAATCGTGATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAGC-T-AGGGGT 237
|| ||||| ||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 201 GCCTAAAAACCGTGATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAACCTCACGTTT 260
Query 238 ATGCCTGGCGAGCGTGTATGTAGATGTGATTATGATTGTTAA 279
| |||||||| ||| |||||||||||||||||||||| |||
Sbjct 261 -T-CCTGGCGAACGTATATGTAGATGTGATTATGATTGCTAA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9729675195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5