BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10465.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942863 jgi|Araly1|942863|scaffold_603407.1 865 0.0
> Ahg942863 jgi|Araly1|942863|scaffold_603407.1
Length=592
Score = 865 bits (468), Expect = 0.0
Identities = 544/581 (94%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 27 TAGTCGTAGATGTCTTCCTTGA-TAGTGAAAAGTCTCGGGTCCATTGTCTCTATCATTGC 85
||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 12 TAGACGTAGATGTCTTCCTTGATTA-TGAAAAGTCTCGGGTCCATTGTCTCTATCATTAC 70
Query 86 AAGAATTTTCTTCTTTCGACGTAGCCGTCCTGTGTCTAATCCAAGAACCACCGCACATAT 145
||||||||||| ||||||||| | ||| ||||||||||||||||||||| |||||||
Sbjct 71 AAGAATTTTCTCCTTTCGACGCGGTCGTTATGTGTCTAATCCAAGAACCACAACACATAT 130
Query 146 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTGAAGGT 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 131 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTCAAGGT 190
Query 206 AAGAATGTGTTGTACTGGTTGCGTCAGGATCGTTAGGAACGCGATCTCCAAACTCCGAGG 265
||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 191 CAGAATGTGTTGCACCGGTTGCGTCAAGATCGTTAGGAACGCAATCTCCAAACTCCGAGG 250
Query 266 AGTTGACTCAGTGGAGGTGGATAAAGAGTTAGGAAGAGTGAGAGTGGTGGGTTATGTTGA 325
|||||| |||||||||||||||| |||||| |||||||| |||||||||||||| |||||
Sbjct 251 AGTTGATTCAGTGGAGGTGGATAGAGAGTTGGGAAGAGTAAGAGTGGTGGGTTACGTTGA 310
Query 326 CAGAAACAAAGTACTCAAAGCCGTGAGGCGAGCGGGGAAGAGAGCTGAGTTTTCGCCATA 385
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 311 CAGAAACAAAGTGCTCAAAGCCGTGAGGCGAGCTGGGAAGAGAGCTGAGTTTTGGCCATA 370
Query 386 CCCTGAACCTCCACTTTACTTCACATCTACTCAAAACTATTTCGTAGATCCTTCGAAAGA 445
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 371 CCCTGAGCCTCCACTTTACTTCACATCTACTCAAAACTACTTCGTAGATCCTTCTAAAGA 430
Query 446 GTTTAAAGAGAGCTATAACTATTATAGACATGGCTACAATGGTACAGAACAACATGGTAA 505
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 431 GTTTAAAGAGAGCTATAACTATTATAGGCATGGCTACAATGGTACGGAACAACATGGTAA 490
Query 506 TATCCCCGTAGGTTCTCGTGGAGACGACAGGGTTAGTAATATGTTCAATGACGATAACGT 565
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 491 TATTCCCGTAGGTTCTCGTGGAGACGATAGGGTTAGTAATATGTTCAATGACGATAACGT 550
Query 566 TAATGCATGCCGTCTCATGTAAACTACATACGTAATGACTT 606
|||||||||||||||||||||| |||||| | ||| |||||
Sbjct 551 TAATGCATGCCGTCTCATGTAA-CTACATGCATAACGACTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5