BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10465.1 Length=884 Score E Sequences producing significant alignments: (Bits) Value Ahg942863 jgi|Araly1|942863|scaffold_603407.1 865 0.0 > Ahg942863 jgi|Araly1|942863|scaffold_603407.1 Length=592 Score = 865 bits (468), Expect = 0.0 Identities = 544/581 (94%), Gaps = 3/581 (1%) Strand=Plus/Plus Query 27 TAGTCGTAGATGTCTTCCTTGA-TAGTGAAAAGTCTCGGGTCCATTGTCTCTATCATTGC 85 ||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 12 TAGACGTAGATGTCTTCCTTGATTA-TGAAAAGTCTCGGGTCCATTGTCTCTATCATTAC 70 Query 86 AAGAATTTTCTTCTTTCGACGTAGCCGTCCTGTGTCTAATCCAAGAACCACCGCACATAT 145 ||||||||||| ||||||||| | ||| ||||||||||||||||||||| ||||||| Sbjct 71 AAGAATTTTCTCCTTTCGACGCGGTCGTTATGTGTCTAATCCAAGAACCACAACACATAT 130 Query 146 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTGAAGGT 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 131 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTCAAGGT 190 Query 206 AAGAATGTGTTGTACTGGTTGCGTCAGGATCGTTAGGAACGCGATCTCCAAACTCCGAGG 265 ||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 191 CAGAATGTGTTGCACCGGTTGCGTCAAGATCGTTAGGAACGCAATCTCCAAACTCCGAGG 250 Query 266 AGTTGACTCAGTGGAGGTGGATAAAGAGTTAGGAAGAGTGAGAGTGGTGGGTTATGTTGA 325 |||||| |||||||||||||||| |||||| |||||||| |||||||||||||| ||||| Sbjct 251 AGTTGATTCAGTGGAGGTGGATAGAGAGTTGGGAAGAGTAAGAGTGGTGGGTTACGTTGA 310 Query 326 CAGAAACAAAGTACTCAAAGCCGTGAGGCGAGCGGGGAAGAGAGCTGAGTTTTCGCCATA 385 |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 311 CAGAAACAAAGTGCTCAAAGCCGTGAGGCGAGCTGGGAAGAGAGCTGAGTTTTGGCCATA 370 Query 386 CCCTGAACCTCCACTTTACTTCACATCTACTCAAAACTATTTCGTAGATCCTTCGAAAGA 445 |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 371 CCCTGAGCCTCCACTTTACTTCACATCTACTCAAAACTACTTCGTAGATCCTTCTAAAGA 430 Query 446 GTTTAAAGAGAGCTATAACTATTATAGACATGGCTACAATGGTACAGAACAACATGGTAA 505 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 431 GTTTAAAGAGAGCTATAACTATTATAGGCATGGCTACAATGGTACGGAACAACATGGTAA 490 Query 506 TATCCCCGTAGGTTCTCGTGGAGACGACAGGGTTAGTAATATGTTCAATGACGATAACGT 565 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 491 TATTCCCGTAGGTTCTCGTGGAGACGATAGGGTTAGTAATATGTTCAATGACGATAACGT 550 Query 566 TAATGCATGCCGTCTCATGTAAACTACATACGTAATGACTT 606 |||||||||||||||||||||| |||||| | ||| ||||| Sbjct 551 TAATGCATGCCGTCTCATGTAA-CTACATGCATAACGACTT 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32747585703 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5