BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10470.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942864 jgi|Araly1|942864|scaffold_603408.1 418 6e-116
> Ahg942864 jgi|Araly1|942864|scaffold_603408.1
Length=1856
Score = 418 bits (226), Expect = 6e-116
Identities = 263/281 (94%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 848 TGACTTTGGTGATAGACATGGCTGTTCCACATCATCACCATCTC-AAAAAGTGGATGTTA 906
||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1350 TGACTTTGGCGATAGACACGGCTGTTCCACATCATCACCATCTCGAAAAA-TGGATGTTA 1408
Query 907 AGAAACTACTTACGACGATTCATGGATTGTCAGAGTTGCTAACACATGTACACAGTTCAG 966
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1409 AGAAACTCCTTACGACGATTCATGGACTGTCAGAGTTGCTAACACATGTACACAGTTCAG 1468
Query 967 AAACTTCGGATTTACCAAATGAGCAGTATCTTGATCTCATCAACTGTACTGTGCAGAATC 1026
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1469 AAACTTCAGATTTACCAAATGAGCAATATCTTGATCTCATCAACTGTACTGTGCAGAATC 1528
Query 1027 TCAACTCCTATATCAATAACAGAGTTCAGGAGCATAGTGGGGATTATGCAAGTGCTGTAC 1086
||||||| || |||||||||| |||||||||||||| |||| || || |||| |||||||
Sbjct 1529 TCAACTCTTACATCAATAACAAAGTTCAGGAGCATACTGGGAATCATTCAAGCGCTGTAC 1588
Query 1087 ATAGTTCATGTGATTTATATTCGTTGCCTAATATGCGTAAG 1127
| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1589 ACAGTTCATGTGATTTATATTCGTTGCCTTATATGCGTAAG 1629
Score = 346 bits (187), Expect = 3e-94
Identities = 302/355 (85%), Gaps = 17/355 (5%)
Strand=Plus/Plus
Query 382 GTTCCAACCAAAACACTAGAATAGGCGTCCTGATCCATGATGCAGATGAGAGTTTGGGTT 441
||||||||||||||||||||| | ||||||| |||||| ||| |||||| ||||||||||
Sbjct 725 GTTCCAACCAAAACACTAGAAGAAGCGTCCTTATCCATCATGTAGATGAAAGTTTGGGTT 784
Query 442 TAGTATCTCAAGATAGTGTTTCCAACACTATGAGTATGTTAGATATTAG-CAACGAGTTC 500
| || |||||||| ||| |||||||||||||||| ||||||||||| | ||| ||||||
Sbjct 785 TGGTTTCTCAAGAGAGTCTTTCCAACACTATGAGCGTGTTAGATATT-GACAAAGAGTTC 843
Query 501 CAAAAGTCTAAAAAGCTGGATCCGTTAGCTCCTGTTTTTGTTCCTGCTTGTGCAAAACT- 559
|||||||||| |||||||||||| || |||||||| ||||||||||||||||||||| |
Sbjct 844 CAAAAGTCTACAAAGCTGGATCCTTTGGCTCCTGTGTTTGTTCCTGCTTGTGCAAAAGTA 903
Query 560 AA-----------GTGAGAAGCACGGTGCAGCAGATCACATGTTAACTATGGAGACAAAT 608
|| |||||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 904 AATGCCGTCGTTCGTGAGAAGCATGGTGCAGCGGATCACATGATAACTATGGAGACAAAT 963
Query 609 GTTGGCTCAACTTCTGGTGTAAGTTCTTCAGACAGTATGTTGCTTAATACTTTTAAGGTT 668
|||||||||||||||||| |||||||| |||||| |||||||||| || | | ||||||
Sbjct 964 GTTGGCTCAACTTCTGGTTTAAGTTCTCCAGACAATATGTTGCTTTCTAATGTAAAGGTT 1023
Query 669 GTTGGGACACATTCTTTAGTGGTCGACCGCAGTTTAAGGAATAGATACTCTAATA 723
| | |||||||||| || |||| || ||||||||| |||| ||||||||||||
Sbjct 1024 GA-G--ACACATTCTTCAGAGGTCCACGGCAGTTTAAAGAATCGATACTCTAATA 1075
Score = 182 bits (98), Expect = 9e-45
Identities = 123/135 (91%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 720 AATACAAGATTGGATAGGTCCAGCAACAAGTCTCATGGTCGGAAGAAGCTAAATCCTCTG 779
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1144 AATACAAAACTGGATAGGTCCAGCAACAAGTCTCATGGTCGGAAGAAACTAAATCCTCTG 1203
Query 780 GCTCCTCGGTTCTCACTAGCAGATCATAAACAAAATGTATATGGCTGTGAGGTAAACCAA 839
|| |||| |||||||||||||||| |||||||||| ||| ||||||||||| |||||||
Sbjct 1204 GCCCCTCAGTTCTCACTAGCAGATAATAAACAAAAAGTAAATGGCTGTGAGAAAAACCAA 1263
Query 840 GCTGCAAATGACTTT 854
| ||||||||| |||
Sbjct 1264 GGTGCAAATGA-TTT 1277
Score = 97.1 bits (52), Expect = 3e-19
Identities = 67/74 (91%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 1125 AAGGTTATAAGAAATCATCATCAAACAGAAGAGCAAATCAACCCAGAGGTGTGTTTTTAT 1184
||||||||| | ||||||||||||||||||||||||||||| | || | |||||||| ||
Sbjct 1780 AAGGTTATAGGGAATCATCATCAAACAGAAGAGCAAATCAATCTAG-G-TGTGTTTTAAT 1837
Query 1185 AAAAGCTTATGGCT 1198
||||||||||||||
Sbjct 1838 AAAAGCTTATGGCT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5