BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10480.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489891 jgi|Araly1|489891|fgenesh2_kg.6__3025__AT4G10480.1 1098 0.0
> Ahg489891 jgi|Araly1|489891|fgenesh2_kg.6__3025__AT4G10480.1
Length=852
Score = 1098 bits (594), Expect = 0.0
Identities = 687/729 (94%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 AGGGTTAGTTTCGCTGCGCTGTTTCAAGGGTTTTCGTTTTTATCTTTTCCTCCgaagaag 60
|||||||||||||||||||||||| ||||||||||| |||| | |||||||
Sbjct 1 AGGGTTAGTTTCGCTGCGCTGTTTTAAGGGTTTTCG--------TTTT--T--GAAGAAG 48
Query 61 aagataagaggttgaagaagaagaagaTGCCAGGTCCAGTTATTGAGGAAGTGAATGAGG 120
||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 49 AAGATAAGAGGTT---GAAGAAGAAGATGCCAGGACCAGTTATCGAGGAAGTGAATGAGG 105
Query 121 AGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGAAGGAGAACGATGTTGTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGAAGGAGAACGATGTTGTTG 165
Query 181 TTGAGgatgtgaaagatggagacgaagacgatgatgatgttgatgacgacgacgatgaga 240
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 166 TTGAGGATGTGAAAGATGGTGATGACGACGACGATGATGTTGATGACGACGACGATGAGA 225
Query 241 ttgctgatgGAGCTGGTGAGAATGAG-GCTTCCAAGCAAAGTAGAAGCGAGAAGAAAAGC 299
||||||||||||||| |||||||||| | ||| ||||||||||| |||||||||||||||
Sbjct 226 TTGCTGATGGAGCTGCTGAGAATGAGAG-TTCTAAGCAAAGTAGGAGCGAGAAGAAAAGC 284
Query 300 CGAAAGGCGATGCTGAAACTCGGAATGAAACCTGTTACTGATGTTAGCAGAGTGACTATC 359
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 285 CGAAAGGCGATGCTGAAACTGGGAATGAAACCTGTCACTGATGTTAGCAGAGTGACTATC 344
Query 360 AAGAGATCAAAGAATGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAAC 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 345 AAGAGATCAAAGAATGTGTTGTTTGTCATCTCGAAGCCGGATGTTTTCAAGAGTCCCAAT 404
Query 420 TCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGCTACAA 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 405 TCTGAGACCTATGTGATATTTGGTGAGGCTAAGATTGATGACATGAGCTCTCAGCTGCAA 464
Query 480 GCACAAGCTGCTCAGAGGTTCAAGATGCCTGACGTTGCGTCTATGATCCCCAACACTGAT 539
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 465 GCACAAGCTGCTCAGAAGTTCAAGATGCCTGATGTTGCGTCTATGATCCCCAACACCGAT 524
Query 540 GGTTCTGAAGCAGCCACGGTTGCACAAGAGGAGGAAGACGATGAAGATGTTGATGAGACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGTTCTGAAGCAGCCACGGTTGCACAAGAGGAGGAAGACGATGAAGATGTTGATGAGACT 584
Query 600 GGTGTTGAAGCCAAGGACATTGATCTTGTGATGACTCAAGCCGGTGTCTCGAGGCCCAAG 659
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 585 GGTGTTGAAGCCAAGGACATTGATCTTGTGATGACTCAAGCTGGTGTCTCGAGGACCAAG 644
Query 660 GCTGTTAAGGCTCTTAAAGAGAGTAACGGAGATATTGTTTCCGCCATTATGGAACTCACT 719
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 645 GCTGTTAAGGCTCTTAAAGCCAGTGACGGAGATATTGTTTCCGCCATTATGGAACTCACT 704
Query 720 ACATAGGTT 728
|||||||||
Sbjct 705 ACATAGGTT 713
Score = 113 bits (61), Expect = 2e-24
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 845 CTTTCTCTGAGCCATAAACAATGTTGCTTCACATCTATAATTTGAGACGTTTATGTCTAG 904
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 776 CTTCCTCTGAGCCATAAACAATGTTGCTTCACATCTATAATTTGAGATTTTTATGTCTAA 835
Query 905 TGTTGTTAACTCTTTA 920
|||||||| |||||||
Sbjct 836 TGTTGTTATCTCTTTA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5