BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10490.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895189 jgi|Araly1|895189|Al_scaffold_0006_3185 1469 0.0
Ahg908135 jgi|Araly1|908135|Al_scaffold_0002_1216 1018 0.0
Ahg939279 jgi|Araly1|939279|scaffold_503470.1 222 4e-57
> Ahg895189 jgi|Araly1|895189|Al_scaffold_0006_3185
Length=1056
Score = 1469 bits (795), Expect = 0.0
Identities = 967/1050 (92%), Gaps = 12/1050 (1%)
Strand=Plus/Plus
Query 37 GCAGCATCAAAACTCCTCGTATCCGACATCGCCTCTGTCGTTGATCACGTCCCTTCAAAC 96
||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 13 GCAACATCAAAGCTCCTCGTATCCGACATCGCCTCAGTTGTTGATCACGTCCCTTCAAAC 72
Query 97 TACGTCAGACCAGTCTCTGACCGTCCAAAAATGTCCGAGGTTCAAACTTCCGGCGACTCT 156
|||||| |||||||||||||||||||||| ||||| |||||| |||||| ||||| |||
Sbjct 73 TACGTCCGACCAGTCTCTGACCGTCCAAACATGTCTGAGGTTGAAACTTTTGGCGATTCT 132
Query 157 ATTCCTC-TAATCGATCTCCACGACCTCCATGGACCTAATCGAGCTGACATTATCAATCA 215
| ||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 133 A-TCCCCTTAATCGATCTCCAAGACCTCCATGGACCTAATCGAGCCAACATTATCAATCA 191
Query 216 GTTTGCTCATGCATGCTCTTCTTGTGGCTTCTTCCAGATCAAGAACCATGGAGTACCAGA 275
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 192 GTTTGCTCATGCATGCTCTTCTTATGGCTTCTTTCAGATCAAGAACCATGGAGTGCCAGA 251
Query 276 AGAAACGATCaaaaaaaTGATGAATGCGGCAAGAGAGTTTTTCCGGCAATCAGAGAGCGA 335
||||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 252 AGAAATAATCAAGCAAATGATGAATGTGGGAAGAGAGTTTTTCCATCAATCAGAGAGCGA 311
Query 336 AAGAGTGAAGCATTACTCAGCAGATACCAAAAAGACAACGAGACTCTCCACAAGTTTCAA 395
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 312 AAGGGTGAAGCATTACTCTGCGGATACCAAAAAGACAACAAGACTCTCCACAAGTTTCAA 371
Query 396 CGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGACTCCATTGCTACCCTAT 455
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 372 CGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGACTCCATTGTTATCCTAT 431
Query 456 CGAAGATTTCAT-CAATGAATGGCCCTCAACACC-GATCTCTTTCAGAGAAGTCACAGCC 513
|||||||||||| || |||||||||||||| || | | ||||| ||||||||||||||
Sbjct 432 CGAAGATTTCATTCAC-GAATGGCCCTCAACTCCAGTT-TCTTTTAGAGAAGTCACAGCT 489
Query 514 GAATACGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGAGGCAATCTCAGAGAGC 573
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGAGGCAATCTCAGAGAGC 549
Query 574 TTAGGTCTTGCGAAAGACCGTGTAAGCAATACAATAGGCAAACATGGTCAACACATGGCT 633
||||| |||| ||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 550 TTAGGCCTTGTGAAAGACCGTGTAAGCAATACTTTAGGAAAACACGGTCAACACATGGCT 609
Query 634 ATTAACTACTATCC-CCGGTGTCCTCAACCAGAGCTAACTTACGGACTTCCGGGGCATAA 692
|| ||||| ||||| ||| ||||| ||||| |||||||||||||||||||| || |||||
Sbjct 610 ATAAACTATTATCCGCCG-TGTCCGCAACCCGAGCTAACTTACGGACTTCCCGGACATAA 668
Query 693 AGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGTGTTTA- 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 669 AGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGT-TTTCG 727
Query 752 AAGATGGTAAATGGATCGCTGTTAATCCTGTTCCCAACACTTTCATAGTCAACCTTGGTG 811
|||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 728 AAGACGGTAAATGGATTGCTGTTAATCCTATTCCCAACACTTTTATAGTCAACCTTGGTG 787
Query 812 ACCAAATGCAGGTTATAAGCAATGAAAAATACAAGAGTGTTCTTCACAGAGCGGTTGTGA 871
|||| |||||||| ||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 788 ACCAGATGCAGGTGATAAGCAATGACAAATACAAGAGTGTGCTACACAGAGCTGTTGTGA 847
Query 872 ACAGCGACATGGAGCGGATATCGATACCGACATTCTACTGTCCTTCTGAAGATGCTGTGA 931
||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 848 ACATCGACAAAGAGAGGATATCAATACCGACATTCTACTGTCCTTCTGAAGATGCTATGA 907
Query 932 TTAGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCCTGCTATTTACAGAAACT 991
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 908 TTGGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCATGCTATTTACAGAAACT 967
Query 992 TTACATATGCTGAATATTTTGAAAAGTTTTGGGACACAGCATTTG-ATACTGAGAGCTGT 1050
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 968 TTACATATGCTGAGTATTTTGAAAAGTTTTGGGACACAGCATTTGCA-ACTGAGAGCTGT 1026
Query 1051 ATTGACTCGTTCAAAGCATCCACCGCCTAA 1080
||||||||||||||||| ||||||||||||
Sbjct 1027 ATTGACTCGTTCAAAGCTTCCACCGCCTAA 1056
> Ahg908135 jgi|Araly1|908135|Al_scaffold_0002_1216
Length=771
Score = 1018 bits (551), Expect = 0.0
Identities = 656/706 (93%), Gaps = 10/706 (1%)
Strand=Plus/Plus
Query 380 TCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGAC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGAC 130
Query 440 TCCATTGCTACCCTATCGAAGATTTCAT-CAATGAATGGCCCTCAACACC-GATCTCTTT 497
||||||| || ||||||||||||||||| || |||||||||||||| || | | |||||
Sbjct 131 TCCATTGTTATCCTATCGAAGATTTCATTCAC-GAATGGCCCTCAACTCCAGTT-TCTTT 188
Query 498 CAGAGAAGTCACAGCCGAATACGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGA 557
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 189 TAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGA 248
Query 558 GGCAATCTCAGAGAGCTTAGGTCTTGCGAAAGACCGTGTAAGCAATACAATAGGCAAACA 617
||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||
Sbjct 249 GGCAATCTCAGAGAGCTTAGGCCTTGTGAAAGACCGTGTAAGCAATACTTTAGGAAAACA 308
Query 618 TGGTCAACACATGGCTATTAACTACTATCC-CCGGTGTCCTCAACCAGAGCTAACTTACG 676
||||||||||||||||| ||||| ||||| ||| ||||| ||||| |||||||||||||
Sbjct 309 CGGTCAACACATGGCTATAAACTATTATCCGCCG-TGTCCGCAACCCGAGCTAACTTACG 367
Query 677 GACTTCCGGGGCATAAAGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTG 736
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GACTTCCCGGACATAAAGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTG 427
Query 737 GTTTACAGGTGTTT-AAAGATGGTAAATGGATCGCTGTTAATCCTGTTCCCAACACTTTC 795
|||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 428 GTTTACAGGT-TTTCAAAGACGGTAAATGGATTGCTGTTAATCCTGTTCCCAACACTTTT 486
Query 796 ATAGTCAACCTTGGTGACCAAATGCAGGTTATAAGCAATGAAAAATACAAGAGTGTTCTT 855
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 487 ATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATACAAGAGTGTGCTA 546
Query 856 CACAGAGCGGTTGTGAACAGCGACATGGAGCGGATATCGATACCGACATTCTACTGTCCT 915
|||||||| |||||||||| ||||| ||| ||||||| |||| ||||||||||||||||
Sbjct 547 CACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACTGACATTCTACTGTCCT 606
Query 916 TCTGAAGATGCTGTGATTAGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCCT 975
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 TCTGAAGATGCTATGATTGGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCAT 666
Query 976 GCTATTTACAGAAACTTTACATATGCTGAATATTTTGAAAAGTTTTGGGACACAGCATTT 1035
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 GCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTTTGGGACACAGCATTT 726
Query 1036 G-ATACTGAGAGCTGTATTGACTCGTTCAAAGCATCCACCGCCTAA 1080
| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 GCA-ACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCACCGCCTAA 771
> Ahg939279 jgi|Araly1|939279|scaffold_503470.1
Length=515
Score = 222 bits (120), Expect = 4e-57
Identities = 155/172 (90%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 651 GTGTCCTCAACCAGAGCTAACTTACGGACTTCCGGGGCATAAAGATGCAAACTTGATCAC 710
|||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 135 GTGTCCTCAACCGGAGCTAACTTACGGACTTCCGACACATAAAGATTCAATTTTGATCAT 194
Query 711 TGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGTGTTTAAAGATGGTAAATGGATCGC 770
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 195 TGTTCTTCTTCAAGACGAAGTCTCTGGTTTACAGGTGTTTAAAGATGGTAAATGGGTTGT 254
Query 771 TGTTAATCCTGTTCCCAACAC-TTTCATAGTCAACCTTGGTGACCAAATGCA 821
|||| || ||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 255 TGTTCATTCTGTTCCCAACACATTT-ATAGTCAATCTTGGTGACCAAATGCA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5