BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10500.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352125 jgi|Araly1|352125|fgenesh1_pg.C_scaffold_6002718 1517 0.0
Ahg895189 jgi|Araly1|895189|Al_scaffold_0006_3185 793 0.0
Ahg908135 jgi|Araly1|908135|Al_scaffold_0002_1216 568 5e-161
> Ahg352125 jgi|Araly1|352125|fgenesh1_pg.C_scaffold_6002718
Length=1053
Score = 1517 bits (821), Expect = 0.0
Identities = 978/1054 (93%), Gaps = 9/1054 (1%)
Strand=Plus/Plus
Query 73 ATGGCAACTTCTGCAATATCTAAGCTCTTAGTGTCTGATTTCGCCTCCTCCG-T--TCAC 129
|||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1 ATGGCAACTTCTGCAACATCTAAGCTCTTAGTGTCTGATTTCGACTCCTCCGTTAGTCAC 60
Query 130 ATCCCTTCAAACTATGTCCGACCAATCTCCGACCGTCCGAACTTGTCCGAGGTCGAGAGT 189
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 ATCCCTTCAAACTATGTCCGACCAATCTTGGACCGTCCAAACTTGTCCGAGGTCGAGAGT 120
Query 190 TCTGGCGATTCCATCCCTCTGATCGATCTCCGGGACCTCCATGGACCTAATCGAGCCGTA 249
|| |||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
Sbjct 121 TCCAGCGATTCCATCCCTCTAATCGATCTCCGGGAGCTTCATGGACCTAATCGAGCCG-A 179
Query 250 A-TTGTCCAACAACTTGCTAGTGCGTGTTCCACTTATGGTTTCTTTCAGATCAAGAATCA 308
| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AGTTGTCCAGCAACTTGCTATTGCTTGTTCCACTTATGGTTTCTTTCAGATCAAGAATCA 239
Query 309 TGGAGTACCAGATACAACCGTCA-ATAAAATGCAAACCGTTGCGAGAGAGTTCTTCCATC 367
||||||||| ||||||||| | | ||||||| | |||||| || ||||||||||||||||
Sbjct 240 TGGAGTACCGGATACAACCAT-AGATAAAATACTAACCGTAGCAAGAGAGTTCTTCCATC 298
Query 368 AACCCGAGAGCGAAAGAGTCAAACACTACTCCGCAGATCCAACAAAGACAACGAGACTCT 427
||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 299 AACCCGAAAGCGAAAGAGTCAAACACTACTCGGCCGATCCAACAAAGACGACGAGGGTCT 358
Query 428 CCACCAGTTTCAACGTCGGCGCAGACAAAGTCTTGAACTGGAGAGACTTCCTTAGACTCC 487
|||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 359 CCACCAGTTTCAACATCGGCGCAGACAAAATCTTGAATTGGAGAGACTTCCTTAGACTCC 418
Query 488 ATTGCTTTCCCATAGAAGATTTCATCGAAGAATGGCCAT-CTAGTCCCATCTCTTTCAGA 546
||||||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| |
Sbjct 419 ATTGCTTTCCCATTGAAGATTTCATTGAAGAATGGCC-TACTAGTCCCAACTCTTTCAAA 477
Query 547 GAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTTCTTGAGGCC 606
||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||
Sbjct 478 GAAGTAACAGCTGAATACGCGACAAGCGTAAGAGCTTTGGTTTTGAGACTTCTTGAAGCC 537
Query 607 ATCTCAGAGAGTTTAGGCCTTGAAAGCGACCATATAAGCAATATATTAGGCAAACACGCT 666
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 ATCTCAGAGAGCTTAGGCCTTGAAAGCGATCATATAAGCAATATATTAGGCAAACACGCT 597
Query 667 CAACACATGGCGTTTAACTACTATCCGCCGTGTCCAGAACCCGAGCTAACTTACGGACTT 726
||||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||||
Sbjct 598 CAACACATGGCCTTTAATTACTATCCACCATGTCCCGAGCCCGAGCTAACTTACGGACTT 657
Query 727 CCCGGACATAAAGACCCAACCGTTATCACTGTCCTTCTTCAAGACCAAGTCTCTGGTTTG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCCGGACATAAAGACCCAACCGTTATCACTGTCCTTCTTCAAGACCAAGTCTCTGGTTTG 717
Query 787 CAAGTCTTTAAGGATGATAAATGGGTCGCTGTTAGTCCAATTCCCAACACTTTCATCGTC 846
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 718 CAAGTCTTTAAGGATAATAAGTGGGTCGCTGTTAATCCAATTCCCAACACTTTCATTGTC 777
Query 847 AATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACAAGAGTGTGCTCCATAGA 906
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 778 AACATCGGCGACCAAATGCAGGTCATCAGCAACGATAAATACAAGAGTGTGCTCCACAGA 837
Query 907 GCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTTTCTATTTCCCTTCAACA 966
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 838 GCCGTAGTGAACACCGAGAAGGAGCGATTATCGATTCCGACATTCTATTTCCCTTCGACA 897
Query 967 GATGCAGTGATTGGTCCAGCACACGAGCTGGTCAATGAACAAGACTCTCTTGCCATTTAC 1026
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 898 GATGCAGTGATTGGTCCAGCACACGAGCTGATCAATGAACAAGACTCTCTTGCTGTTTAC 957
Query 1027 AGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTTGGAACAGATCACTTGCTACTGCG 1086
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 AGAACCTTCCCATTTGTTGAGTATTGGGACAAGTTTTGGAACAGATCACTCGCTACTGCT 1017
Query 1087 AGCTGTCTAGACGCCTTCAAAGCTCCAACAACCT 1120
|||||||| ||||||||||||||| |||||||||
Sbjct 1018 AGCTGTCTCGACGCCTTCAAAGCTTCAACAACCT 1051
> Ahg895189 jgi|Araly1|895189|Al_scaffold_0006_3185
Length=1056
Score = 793 bits (429), Expect = 0.0
Identities = 867/1072 (81%), Gaps = 55/1072 (5%)
Strand=Plus/Plus
Query 73 ATGGCAACTTCTGCAATATCTAAGCTCTTAGTGTCTGATTTCGCCTC--CT-CCGTTCAC 129
|||||| ||||||||| ||| |||||| | || || || ||||||| | | ||||
Sbjct 1 ATGGCAGCTTCTGCAACATCAAAGCTCCTCGTATCCGACATCGCCTCAGTTGTTGATCAC 60
Query 130 ATCCCTTCAAACTATGTCCGACCAATCTCCGACCGTCCGAACTTGTCCGAGGTCGAGAGT 189
||||||||||||| ||||||||| |||| |||||||| ||| |||| ||||| || | |
Sbjct 61 GTCCCTTCAAACTACGTCCGACCAGTCTCTGACCGTCCAAACATGTCTGAGGTTGAAACT 120
Query 190 TCTGGCGATTCCAT-CCCTCTGATCGATCTCCGGGACCTCCATGGACCTAATCGAGCCGT 248
| ||||||||| || |||| | |||||||||| ||||||||||||||||||||||||
Sbjct 121 TTTGGCGATTCTATCCCCT-TAATCGATCTCCAAGACCTCCATGGACCTAATCGAGCC-A 178
Query 249 A-ATTGTCCAA-CAACTTGCT-AGTGCGTGTTCCACTTATGGTTTCTTTCAGATCAAGAA 305
| ||| | ||| || ||||| | ||| || || ||||||| |||||||||||||||||
Sbjct 179 ACATTAT-CAATCAGTTTGCTCA-TGCATGCTCTTCTTATGGCTTCTTTCAGATCAAGAA 236
Query 306 TCATGGAGTACCAG-ATACAACCGTCAATAAAATGCA--AACCGTTGCG-AGAGAGTTCT 361
|||||||| |||| | | || |||| ||||| | || | || | |||||||| |
Sbjct 237 CCATGGAGTGCCAGAAGA-AATAATCAAGCAAATG-ATGAA-TG-TGGGAAGAGAGTTTT 292
Query 362 TCCATCAACCCGAGAGCGAAAGAGTCAAACACTACTCCGCAGAT-CCAACAAAGACAACG 420
|||||||| | ||||||||||| || || || ||||| || ||| |||| |||||||||
Sbjct 293 TCCATCAATCAGAGAGCGAAAGGGTGAAGCATTACTCTGCGGATACCAA-AAAGACAACA 351
Query 421 AGACTCTCCACCAGTTTCAACGTCGGCGCAGACAAAGTCT-TGAACTGGAGAGACTTCCT 479
||||||||||| ||||||||||| | ||| ||||||| | |||||||||||||||||
Sbjct 352 AGACTCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCT-AACTGGAGAGACTTCCT 410
Query 480 TAGACTCCATTGCTT-TCCCATAGAAGATTTCA-TCGAAGAATGGCCATCTAGTCCCA-T 536
| |||||||||| || ||| || |||||||||| || | |||||||| || | | ||| |
Sbjct 411 TCGACTCCATTG-TTATCCTATCGAAGATTTCATTC-ACGAATGGCCCTCAACT-CCAGT 467
Query 537 CTCTTTCAGAGAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACT 596
||||| ||||||||||||||||||||||| || ||||| ||||| |||||| ||| |||
Sbjct 468 TTCTTTTAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACT 527
Query 597 TCTTGAGGCCATCTCAGAGAGTTTAGGCC-T-TGAAAGCGACCATATAAGCAATA-TATT 653
||||||||| ||||||||||| ||||||| | ||||| |||| | ||||||||| | ||
Sbjct 528 TCTTGAGGCAATCTCAGAGAGCTTAGGCCTTGTGAAA--GACCGTGTAAGCAATACT-TT 584
Query 654 AGGCAAACACGCTCAACACATGGCGT-TTAACTACTATCCGCCGTGTCCAG-AACCCGAG 711
||| ||||||| |||||||||||| | | ||||| |||||||||||||| | ||||||||
Sbjct 585 AGGAAAACACGGTCAACACATGGC-TATAAACTATTATCCGCCGTGTCC-GCAACCCGAG 642
Query 712 CTAACTTACGGACTTCCCGGACATAAAGACCCAACCGTT-ATCACTGTCCTTCTTCAAGA 770
||||||||||||||||||||||||||||| ||| | || |||||||| |||||||||||
Sbjct 643 CTAACTTACGGACTTCCCGGACATAAAGATGCAAAC-TTGATCACTGTTCTTCTTCAAGA 701
Query 771 CCAAGTCTCTGGTTTGCAAGTCTTT--AAGGATGATAAATGGGTCGCTGTTAGTCCAATT 828
||||||||||||| || || ||| ||| | | ||||||| | ||||||| ||| |||
Sbjct 702 TGAAGTCTCTGGTTTACAGGT-TTTCGAAG-ACGGTAAATGGATTGCTGTTAATCCTATT 759
Query 829 CCCAACACTTTCATCGTCAATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATAC 888
||||||||||| || ||||| | || ||||| |||||||| ||||||||||| ||||||
Sbjct 760 CCCAACACTTTTATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATAC 819
Query 889 AAGAGTGTGCTCCATAGAGCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACT 948
||||||||||| || ||||| || || |||| ||| || ||| || |||| || |||||
Sbjct 820 AAGAGTGTGCTACACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACCGACA 879
Query 949 TTCTATT-TCCCTTCA-ACAGATGC-AGTGATTGGTCCAGCACACGAGCTGGTCAATGA- 1004
||||| | ||| ||| | |||||| | |||||||||||||||| |||||| |||||||
Sbjct 880 TTCTACTGTCC-TTCTGA-AGATGCTA-TGATTGGTCCAGCACAAGAGCTGATCAATGAG 936
Query 1005 -AC-AAGACTCTCTTGCCATTTACAGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTT 1062
| ||||||||| ||| |||||||||| || | | || |||||||| || ||||||
Sbjct 937 GAAGAAGACTCTCATGCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTT 996
Query 1063 TGGAACAGATCACTTGCTACTGCGAGCTGTCTAGACGCCTTCAAAGCT-CCA 1113
||| ||| | || |||| |||| ||||||| | ||| | ||||||||| |||
Sbjct 997 TGGGACACAGCATTTGCAACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCA 1048
> Ahg908135 jgi|Araly1|908135|Al_scaffold_0002_1216
Length=771
Score = 568 bits (307), Expect = 5e-161
Identities = 579/707 (82%), Gaps = 32/707 (5%)
Strand=Plus/Plus
Query 425 TCTCCACCAGTTTCAACGTCGGCGCAGACAAAGTCT-TGAACTGGAGAGACTTCCTTAGA 483
||||||| ||||||||||| | ||| ||||||| | |||||||||||||||||| ||
Sbjct 71 TCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCT-AACTGGAGAGACTTCCTTCGA 129
Query 484 CTCCATTGCTT-TCCCATAGAAGATTTCA-TCGAAGAATGGCCATCTAGTCCCA-TCTCT 540
|||||||| || ||| || |||||||||| || | |||||||| || | | ||| | |||
Sbjct 130 CTCCATTG-TTATCCTATCGAAGATTTCATTC-ACGAATGGCCCTCAACT-CCAGTTTCT 186
Query 541 TTCAGAGAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTTCTT 600
|| ||||||||||||||||||||||| || ||||| ||||| |||||| ||| |||||||
Sbjct 187 TTTAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTT 246
Query 601 GAGGCCATCTCAGAGAGTTTAGGCC-T-TGAAAGCGACCATATAAGCAATA-TATTAGGC 657
||||| ||||||||||| ||||||| | ||||| |||| | ||||||||| | |||||
Sbjct 247 GAGGCAATCTCAGAGAGCTTAGGCCTTGTGAAA--GACCGTGTAAGCAATACT-TTAGGA 303
Query 658 AAACACGCTCAACACATGGCGT-TTAACTACTATCCGCCGTGTCCAG-AACCCGAGCTAA 715
||||||| |||||||||||| | | ||||| |||||||||||||| | ||||||||||||
Sbjct 304 AAACACGGTCAACACATGGC-TATAAACTATTATCCGCCGTGTCC-GCAACCCGAGCTAA 361
Query 716 CTTACGGACTTCCCGGACATAAAGACCCAACCGTT-ATCACTGTCCTTCTTCAAGACCAA 774
||||||||||||||||||||||||| ||| | || |||||||| ||||||||||| ||
Sbjct 362 CTTACGGACTTCCCGGACATAAAGATGCAAAC-TTGATCACTGTTCTTCTTCAAGATGAA 420
Query 775 GTCTCTGGTTTGCAAGTCTTT-AAGGATGATAAATGGGTCGCTGTTAGTCCAATTCCCAA 833
||||||||||| || || ||| || || | ||||||| | ||||||| ||| |||||||
Sbjct 421 GTCTCTGGTTTACAGGT-TTTCAAAGACGGTAAATGGATTGCTGTTAATCCTGTTCCCAA 479
Query 834 CACTTTCATCGTCAATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACAAGAG 893
|||||| || ||||| | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct 480 CACTTTTATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATACAAGAG 539
Query 894 TGTGCTCCATAGAGCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTTTCTA 953
|||||| || ||||| || || |||| ||| || ||| || |||| || | ||| |||||
Sbjct 540 TGTGCTACACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACTGACATTCTA 599
Query 954 TT-TCCCTTCA-ACAGATGC-AGTGATTGGTCCAGCACACGAGCTGGTCAATGA--AC-A 1007
| ||| ||| | |||||| | |||||||||||||||| |||||| ||||||| | |
Sbjct 600 CTGTCC-TTCTGA-AGATGCTA-TGATTGGTCCAGCACAAGAGCTGATCAATGAGGAAGA 656
Query 1008 AGACTCTCTTGCCATTTACAGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTTGGAA 1067
|||||||| ||| |||||||||| || | | || |||||||| || ||||||||| |
Sbjct 657 AGACTCTCATGCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTTTGGGA 716
Query 1068 CAGATCACTTGCTACTGCGAGCTGTCTAGACGCCTTCAAAGCT-CCA 1113
|| | || |||| |||| ||||||| | ||| | ||||||||| |||
Sbjct 717 CACAGCATTTGCAACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5